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Author Topic:   Irreducible Complexity and TalkOrigins
NosyNed
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Posts: 9004
From: Canada
Joined: 04-04-2003


Message 11 of 128 (435923)
11-23-2007 7:37 PM
Reply to: Message 10 by TheWay
11-23-2007 7:15 PM


Point mutations and information
Hello TW
I'll jump in for a moment to keep things moving if that is ok.
All point mutations that have been studied on the molecular level turn out to reduce the genetic information and not to increase it.
There is this quote you supplied. It is all by itself obviously wrong.
First note that your source has defined information in DNA in a way that seems (as far as you quote) to be compatible with C. Shannon's definition. Let's say for now that it is.
Second do you know what a point mutation is? It is a change in one of the base pairs in the DNA. Let's say somewhere in your DNA there is a string AAGCATGG. Now let's say that there is a point mutation and the next generation gets AAGCATGA instead. Now let's say that Spetner is correct and this point mutation is a reduction in information. (it isn't by the Shannon definition by the way. In fact, I am guessing that a careful calculation will show it is a tiny increase )
Now we have the string AAGCATGA somewhere in some genome (maybe your grandkids). Now a point mutation occurs and we get AAGCATGG in the next generation. If the first point mutation caused a reduction information this one must be causing an increase. Do you get that?
Now, we need to understand what he is saying. Clearly he can not be saying that point mutations can not increase this "information" (which isn't yet carefully enough defined -- for one thing we don't know how to calculate the amount of it yet -- for "information" as it is used most of the time we do). So the only thing he can be saying is that the ones we have studied don't increase information.
But this seems enormously unlikely. For example: If you had a string in your DNA that went AAAAAAAAAAAAAAAA then it contains only (about - I'm not doing the calc.) 6 bits of information. (2 bits to pick the letter out of 4 and 4 more bits to give the number of repeats). If however there is a point mutation that puts a T in place of the 8th A we now have ( I think) 15 bits of information (2 bits for the first letter, 3 bits for it's repeat length then 2 more for the T, 1 bit for it's repeat, 2 more for the next A and 3 more for it's repeat length).
So we'd need Spetner's method of calculating information to check out what he says. But it sure looks wrong.

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NosyNed
Member
Posts: 9004
From: Canada
Joined: 04-04-2003


Message 18 of 128 (436068)
11-24-2007 9:48 AM
Reply to: Message 16 by Dr Adequate
11-24-2007 6:54 AM


Komogorov vs Shannon
That would be Kolmogorov complexity. And yes, mutations can increase it, as you point out.
Maybe but I think it is also directly related to Shannon information too. That is related the minimum number of bits to specify the value. (the ln of as I recall).
How is KC calculated?

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NosyNed
Member
Posts: 9004
From: Canada
Joined: 04-04-2003


Message 20 of 128 (436075)
11-24-2007 11:03 AM
Reply to: Message 19 by Dr Adequate
11-24-2007 10:55 AM


Shannon ?
So is there or is there not a specification for the Shannon info in AAAAAAAAAAAAAAAA and AAAAAAATAAAAAAAA?
What is the value of each?
ABE
And while we are at it can you calculate the difference in KC between the two strings above?
Edited by NosyNed, : added a question

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NosyNed
Member
Posts: 9004
From: Canada
Joined: 04-04-2003


Message 22 of 128 (436083)
11-24-2007 11:43 AM
Reply to: Message 21 by jar
11-24-2007 11:09 AM


Re: Shannon ?
Nope.
It is a single number calculated from the ln of something or another. So that isn't it.

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NosyNed
Member
Posts: 9004
From: Canada
Joined: 04-04-2003


Message 24 of 128 (436108)
11-24-2007 1:34 PM
Reply to: Message 23 by Dr Adequate
11-24-2007 12:20 PM


Re: Shannon ?
They both contain 32 bits of information. To calculate that, you just have to multiply the length of the genome by 2.
I am pretty sure that is wrong. But it'll have to be later before I support that.

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NosyNed
Member
Posts: 9004
From: Canada
Joined: 04-04-2003


Message 26 of 128 (436153)
11-24-2007 3:13 PM
Reply to: Message 25 by Dr Adequate
11-24-2007 2:34 PM


Re: Shannon ?
Message 91
Percy comments here that a random stream of bits has more information than others of the same length. If that is true then the two given strings do not have the same information content.
I believe you have to take the logn of the minimum number of bits required to transmit the stream not a redundant set of bits.

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NosyNed
Member
Posts: 9004
From: Canada
Joined: 04-04-2003


Message 29 of 128 (436214)
11-24-2007 5:56 PM
Reply to: Message 27 by Wounded King
11-24-2007 3:24 PM


less SI
I can't read the paper. Can you show how they argue for less SI in a random sequence? I don't see how that is possible given what I recall of the definition.

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NosyNed
Member
Posts: 9004
From: Canada
Joined: 04-04-2003


Message 33 of 128 (436361)
11-25-2007 9:51 AM
Reply to: Message 32 by Wounded King
11-25-2007 9:09 AM


Re: More or less SI
and potentially the 15(A)1(T) message with 17 bits.
Why only 1 more bit? The position of the T is important not just it's presence anywhere in the string.

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NosyNed
Member
Posts: 9004
From: Canada
Joined: 04-04-2003


Message 37 of 128 (436401)
11-25-2007 3:27 PM
Reply to: Message 36 by Percy
11-25-2007 1:38 PM


Thank you. I'm slow
Thanks Percy. I finally think I get it. It is more complex (pardon the intended pun) than I realized.
Now can someone try again to explain how a point mutation always reduces the information?
Edited by NosyNed, : asked for more

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NosyNed
Member
Posts: 9004
From: Canada
Joined: 04-04-2003


Message 69 of 128 (440496)
12-13-2007 12:45 PM
Reply to: Message 67 by Suroof
12-13-2007 12:23 PM


Appearance of Design
4. since we have no other convincing explanation for the strong appearance of design, Darwinian pretensions notwithstanding, then we are rationally justified in concluding that parts of life were indeed purposely designed by an intelligent agent (Darwin's Black Box, pg. 265)
Please see:
Message 1
Behe's problem is that we do see a particular kind of design. It is exactly the wrong kind of design for your argument. We do NOT see the kind of design that we know results from intelligence. We DO see the kind of design that results from unguided, unintelligent processes.

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NosyNed
Member
Posts: 9004
From: Canada
Joined: 04-04-2003


Message 72 of 128 (440544)
12-13-2007 4:12 PM
Reply to: Message 70 by Suroof
12-13-2007 2:40 PM


a wrong explanation
and the explanation of an intelligent agent is the best explanation of IC available.
And (see post Message 69 it is a wrong explanation because it produces the wrong "kind" of design. So we have clear evidence that life does not have an intelligent designer.

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NosyNed
Member
Posts: 9004
From: Canada
Joined: 04-04-2003


Message 75 of 128 (440558)
12-13-2007 5:03 PM
Reply to: Message 73 by Suroof
12-13-2007 4:49 PM


Re: Appearance of Design
And just what does he say about it?
And noting what Jar had to say, you've decided that Behe is wrong now?
A quick glance at the paper shows that he is NOT talking about the evolution of complex structures but about the origin of life.
What we now KNOW is that once we have living things evolutionary algorithms CAN generate a "kind" of design. It is exactly the kind of design that living things give the appearance of and it is exactly NOT the kind of design that intelligence produces.
If you want, now to argue about the origin of life you will have to go to another thread for that. You will also have to know just what Demski is saying.
Edited by NosyNed, : added a bit

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NosyNed
Member
Posts: 9004
From: Canada
Joined: 04-04-2003


Message 82 of 128 (440613)
12-13-2007 9:35 PM
Reply to: Message 80 by Suroof
12-13-2007 9:25 PM


The Edge
Nobody disputes this. But because Darwinian evolution may have some hand in creating some level of "design", it is the ID argument that at the highest level of complexity, at the edge, EA does not have the capacity to produce this level of complexity - and which requires an intelligent agent.
So we all agree that evolutionary processes can create a great deal of complexity.
In fact, it appears that they can create almost ALL of the complexity we see in life. Behe and others pick a few (very few) things out to suggest a need for some other "help". Of course, the few they have picked on have been shown to be evolvable too. So the question is just where is this edge?
He mentions SC in biology and says IC systems are SC and EA cannot account for them.
Which does not answer my question about the different kinds of design at all. In fact, since he simply asserts that they can not be accounted for he shows nothing useful to you at all. Since you brought this in as a reference it would be nice if you would explain just how SC can not be accounted for?
I would need you to explain just what SC is so I can recognize it when I see it. I don't get it out of the paper you referenced.

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NosyNed
Member
Posts: 9004
From: Canada
Joined: 04-04-2003


Message 87 of 128 (440627)
12-13-2007 10:09 PM
Reply to: Message 84 by Suroof
12-13-2007 9:47 PM


Re: The Edge
No they haven't - the blood clotting cascade, the cilium,
Yes they have. Behe was put on the stand and exposed.
You haven't explained what SC is yet. So your quotes don't mean much yet.

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