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Author Topic:   the phylogeographic challenge to creationism
Faith 
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Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 192 of 298 (266069)
12-06-2005 12:58 PM
Reply to: Message 189 by Modulous
12-06-2005 10:43 AM


Re: Evolution=Random Mutaion + Selection (E=1+x-y)
Fecundity and mutation cause a massive increase in genetic diversity, followed by selection to take the population back to its stable size, but in a different genetic 'direction'. Selection in its own right cannot possibly lead to evolution.
Again, fecundity does not CAUSE an increase in genetic diversity. Mutation does that. The increase is the addition of new alleles, and all fecundity does is provide opportunities for more of that to occur, but again, fecundity does not describe a great many species, especially the ones higher on the food chain as it were.
And while selection may "take the population back to its stable size but in a different genetic "direction" this is accomplished at the expense of genetic diversity. That's the whole point I'm trying to make. Yes, a "different genetic "direction" occurs via all these "evolutionary processes" and it sure LOOKS like a lot of important change for the purposes of validating evolution, but in order for this phenotypic change to occur that LOOKS like a lot of evolution, a lot of GENETIC diversity is being reduced.
Now IF mutation really does produce truly new alleles that can confer survival benefits on a population at a high enough rate to counter the diversity-reducing effects of all these subtractive processes, THEN you MAY have an engine capable of driving evolution. But it is ONLY mutation that the whole thing relies upon, as everything else works in the opposite direction, works against the genetic diversity that evolution surely must depend upon.

This message is a reply to:
 Message 189 by Modulous, posted 12-06-2005 10:43 AM Modulous has replied

Replies to this message:
 Message 195 by BuckeyeChris, posted 12-06-2005 1:09 PM Faith has replied
 Message 216 by Modulous, posted 12-07-2005 5:59 AM Faith has replied

  
Faith 
Suspended Member (Idle past 1474 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 193 of 298 (266070)
12-06-2005 1:01 PM
Reply to: Message 191 by NosyNed
12-06-2005 12:55 PM


Re: Agreed
I always look forward to your little sallies of comic relief, Ned, but I must remind you that the rules of this forum are that you must comment on the SUBSTANTIVE content of the thread, must provide evidence for your assertions, and personal remarks are out of order.

This message is a reply to:
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Faith 
Suspended Member (Idle past 1474 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 196 of 298 (266075)
12-06-2005 1:10 PM
Reply to: Message 194 by NosyNed
12-06-2005 1:03 PM


Re: Rules
Mick requested that you cool it way back in Message 128.
Funny how intolerant you are of anybody who really has something to say against evolution.
This message has been edited by Faith, 12-06-2005 01:12 PM

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Faith 
Suspended Member (Idle past 1474 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 198 of 298 (266080)
12-06-2005 1:23 PM
Reply to: Message 197 by NosyNed
12-06-2005 1:16 PM


Re: Rules
And you just deny as "others of your ilk" do that all the evolutionary processes DO IN FACT not add information, but in fact reduce the very genetic diversity that evolution depends upon. You ignore all that, allow others to think that they contribute when they don't, and rush to emphasize mutation. For good reason. It is evolution's only hope. And considering that when pressed evolutionists will admit that mutation adds something useful so infrequently as to make a joke of the idea, what we are dealing with here is nothing but hidebound prejudice. At least in your case. In the case of others I see that the idea of evolution is seductive, I see how it SEEMS to be a valid possibility, but when you really carefully examine each of its supports they crumble before your eyes. Mutation too, but I'm leaving that one for another discussion because it is the ONLY additive process and I'd like it to be recognized that despite various confusions ALL THE OTHERS are subtractive. I've made the case over and over. I've answered all the objections as they come up. That does get repetitive but so do the objections.
This message has been edited by Faith, 12-06-2005 01:26 PM

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Faith 
Suspended Member (Idle past 1474 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 200 of 298 (266087)
12-06-2005 1:34 PM
Reply to: Message 195 by BuckeyeChris
12-06-2005 1:09 PM


Re: Evolution=Random Mutaion + Selection (E=1+x-y)
I don't understand why you keep driving this point home. Without mutation, the ToE wouldn't work. Ok. Now what? What is the point of this exactly?
The point is that as soon as somebody, such as yourself in this post, acknowledges that "without mutation the ToE wouldn't work" they very soon turn right around and deny it. You haven't -- yet, and maybe you won't, but this is the reason for what I am doing. It will be stated and then denied, and it is denied either by insisting that the other processes aren't really subtractive after all(see DBlevins last post in which he starts out by saying that genetic drift does reduce diversity but in nearly the same breath insists that it facilitates evolution nevertheless, although all it does is produce new phenotypes.) OR it is denied by adding some other processes that supposedly increase diversity besides mutation, such as epigenetics, or as Modulous just did, fecundity (Mammuthus also added that one), selection and variability, which I have answered by showing that they aren't additive at all, but in two cases subtractive and in one merely a method of increasing the numbers of phenotypes regardless of the genetic picture.
If my opponents would simply acknowledge purely and simply that I have made my point without arguing with it in these various ways I would not have to keep repeating it in answer to each new denial.

This message is a reply to:
 Message 195 by BuckeyeChris, posted 12-06-2005 1:09 PM BuckeyeChris has replied

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Faith 
Suspended Member (Idle past 1474 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 201 of 298 (266092)
12-06-2005 1:44 PM
Reply to: Message 199 by BuckeyeChris
12-06-2005 1:29 PM


Re: Rules
Why are you so hung up on the number of proccesses that are either additive or subtractive?
Because it is not generally recognized that the majority of the processes that are taught to biology students as "evolutionary processes" in themselves do not facilitate evolution at all but in fact work against it. People do have the erroneous idea that somehow natural selection, genetic drift, migration and other "evolutionary processes" could lead to evolution, and the fact is that they do not, they work against the possibility of evolution. If this were acknowledged, if students weren't made to absorb this erroneous idea, we could go on to the next topic which is the only genetically additive process, mutation. But when mutation comes up alone, also there the subtractive processes are described as somehow contributing to evolution when all they do is fix in a new phenotype while overall reducing genetic diversity which is counter to evolution.
Even if there's only 1 additive process (mutation) - if it adds more than the others subtract, you have a net gain. What's so hard about this?
First absorb my first point. In answer to this point, yes of course, IF it adds more, IF it somehow produces something useful that is selected, and IF this in some way counters the subtracting processes, sure. I've said this over and over on this thread. First acknowledge the subtracting processes, keep them in mind when mutation is discussed, don't let them get blurred in formulae such as mutation+selection, and THEN we can see if mutation really has this ability to counter them.
Where does mutation "crumble" before our very eyes? You are saying you want to ignore mutation for now, but if it is the "lone hope" for evolution, or whatever you want to call it, what exactly are you accomplishing by not talking about it?
As I've said above, I would HOPE to accomplish making people aware that all the other processes that are called evolutionary processes aren't evolutionary at all but subtractive. It is a necessary starting point for seeing mutation in the right perspective. My saying mutation crumbles was predicated on the other part of the sentence where I remark that evolutionists even admit that a precious few mutations are in any way useful to a species, which makes all the talk about abundance of mutations quite problematic.
If you want to make the case that genetic diversity decreases over time, the one thing you better damn well NOT ignore is mutation.
Of course. First recognize the inexorable trend to the reduction of genetic diversity without taking it back as is being done over and over on this thread, and THEN we can move on.

This message is a reply to:
 Message 199 by BuckeyeChris, posted 12-06-2005 1:29 PM BuckeyeChris has replied

Replies to this message:
 Message 203 by BuckeyeChris, posted 12-06-2005 1:52 PM Faith has replied
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Faith 
Suspended Member (Idle past 1474 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 209 of 298 (266318)
12-07-2005 3:13 AM
Reply to: Message 203 by BuckeyeChris
12-06-2005 1:52 PM


But evolution IS the combination of all these forces, TOGETHER. Evolution is not simply "the addition of genetic diversity" which seems to be your working definition, at least in this post.
No I'm not defining evolution, merely pointing out that evolution depends on genetic diversity but there is only one process that brings this about and that is mutation. Most of the processes that act upon populations to produce changes that ultimately get called "speciation" in fact reduce genetic diversity and that simply works against the whole idea of evolution.
The additions through mutation make evolution possible, as does the subtraction/deletion/killing of selection. So the argument that those forces work against evolution certainly doesn't follow, as those forces are part of evolution.
They are part of the DEFINITION of evolution, certainly, but I'm challenging this definition. If the subtractive "forces" work toward extinction rather than allelic abundance, then they are working against evolution in the process of producing new types. That's all they do: Selection and all the other processes merely promote the expression of new phenotypes, but don't produce new alleles, only mutation does that. All the subtractive "evolutionary processes" produce new phenotypes, which is how they appear to further evolution, but if in the process they always tend toward reduced genetic diversity this production of new phenotypes appears to be merely an illusion of evolution.

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 Message 210 by randman, posted 12-07-2005 3:28 AM Faith has replied

  
Faith 
Suspended Member (Idle past 1474 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 211 of 298 (266320)
12-07-2005 3:41 AM
Reply to: Message 205 by TimChase
12-06-2005 2:16 PM


Re: Ring Species
Wow, I see my attempts to post this last night did take after all, rather too many times, despite my getting the message many times that the site was down. Since then I corrected some things and added to it as well. Sorry, this will be a little different from the original(s), but not by much.
=================================================================
Faith writes:
It's just a variation on the same theme. Subpopulations merely differ from one another because of having different frequencies of alleles from other populations of the same species/kind due to reproductive isolation from the other groups for one reason or another*. Why is this treated as something special? The accidents AND selectively determined incidents of reproductive separation predictably produce new phenotypes by shuffling the alleles at the very least, often reducing the genetic possibilities too. Nothing is necessarily added in order for this to occur. Same situation as in the OP really**, with somewhat different reasons for the variations.
---------------
*"One reason or another" could be natural selection or geographical isolation or bottleneck or anything of that sort.
quote:
Well, what is neat about it is the fact that it demonstrates speciation in action in a way that in a certain sense is frozen in time, so that any time one visits the place, one can see the living evidence.
But evidence of what? Of the fact that populations may vary quite a bit from one another under certain circumstances, sometimes to extremes? This is commonplace. The processes that bring it about are the subtractive processes under discussion, contradicting the idea that these very processes of variation and selection demonstrate evolution.
Wipe out that which connects the two extremes and they are no longer members of the same species -- but are they members of the same species while the bridge exists? Well, yes and no. Is cyan blue or is it green? At this point, we are asking the wrong question.
That's not a question I'm asking. While I'm sure it is possible to judge the limit of speciation from phenotypes somehow or other I'm not looking for it there. I expect to find the limit to speciation at the point where the subtractive processes that act on populations, known as Evolutionary Processes, put a stop to it naturally, which I would consider to be the genetic limit of a Kind.
Additionally, oftentimes those who deny the reality of macroevolution will do so at the level of species, claiming that one species cannot evolve into two. Or maybe they pick a somewhat higher level, such as denying that an autocatalytic RNA strand (essentially, a viroid with the ability to reproduce) could ever evolve into a human being. But once one admits speciation, the rest is largely just a matter of degree.
So goes the theory, but if the processes that bring about speciation simultaneously reduce the genetic diversity that evolution requires (beyond the commonplace variation on given genetic allotments), and mutation turns out not to be a sufficiently effective counter to this subtraction process, then this theory of an open-ended evolution is falsified.
As for the generation of "new information," this is something which occurs principally in terms of the populations. For example, a single nucleic polymorphism ("snip") will result in a new allele, one which didn't exist in the population before -- and that is the generation of new information, but simply noise until it passes through the filter of natural selection into the general population.
This is a side issue but presumably even a deleterious allele could be selected, because of its association with others, no? The perennial question of course is How often are these "new alleles" of any benefit? And, one I've asked before here that I don't believe has yet been answered, How do you KNOW a "new allele ... didn't exist in the population before?" How do you know it is not a rarely occurring event that has always been part of the genetic picture of this species?
However, the more interesting ways of generating new information consists of gene duplication, segmental duplication, chromosomal duplication, and polyploidy -- or the mutation of regulatory DNA which is responsible for determining when, where and how much a given gene gets expressed.
All these are bascially varieties of mutation, right? And the same questions apply. How many are of any real use to the species as opposed to a disease process? If they seem to confer some benefit or at least do no harm, how do you know they are unique to the species?
The duplications make possible sub-functionalization (which is responsible for the dichromatic vision of our ancestors becoming our own trichromatic vision) and neo-functionalization (which is responsible for an enzyme involved in digestion being co-opted for the coagulation of blood).
Again, what makes you so sure that these functions originated from novel events?
And the mutation of regulatory DNA? A great deal more, evidentally. 99% of our 25,000 genes are homologous to the 25,000 genes found in mice. 96% of those genes are in the same exact relative order. So it would seem that the majority of evolution does not occur as the result of mutations in the genes themselves but in terms of the DNA which regulates gene expression.
Such similarities are just as well explained by similarities of design as by descent. Probably at least 99% of all internal combustion-powered vehicles have parts with basically the same function despite vast differences in appearance and speed and so on. The same principle does just as well for living things, needing no appeal to genetic descent.
In any case, mutations take time. Natural selection will reduce the genetic diversity for a while when there exist strong selective pressures, but then new mutations will occur within the population, replentishing its genetic diversity.
So I've heard. But I haven't seen that this actually occurs, it is merely asserted to be the case. A lot is assumed here but not demonstrated.
Moreover, once the two populations have been separated (for whatever reason), the mutations which occur in one population will no longer be communicated to the other population. The two populations will diverge, then tend to adapt to different environments and different pressures.
Yes, again, so goes the theory. But even without mutation, with the portion of the given complement of alleles taken from the parent population, a great deal of divergent changes are not only likely but inevitable. The adaptations, the selection, all the processes work the same way without mutations being assumed. Again, how do you know that any beneficial mutations ARE mutations, that is, how do you know they are novel events rather than predictable events that occur normally and repeatedly in the population?
At some point, even if the two species come into contact with one-another, they will no longer be able to produce fertile offspring -- and they will continue to diverge. Quite simple, actually.
Yes, but the fact that they become unable to interbreed is simply a definitional point for evolutionists, supposedly marking a new "species," although it doesn't in itself demonstrate anything except that subpopulations of a species may vary to the point that interbreeding becomes difficult to impossible between them. (Creationist explanation: The Kinds were designed to vary enormously and the loss of the ability to interbreed would tend to preserve the varieties. In a fallen world unfortunately they tend to extinction at the extremes, but in the original Creation they would merely demonstrate its creative exuberance.)
Of course, if you are looking for really good smoking guns as far as demonstrating the reality of evolution, some of the best I am aware of are pseudogenes and endogenous retroviruses. Not exactly what you would call conclusive -- nothing is in empirical science. As Duhem's thesis shows, it is always possible for someone to choose a less reasonable interpretation of the empirical evidence over a more reasonable interpretation -- indeed, one can coherently maintain that the world is only five minutes or five seconds old without fear of self-contradiction. But for the good majority of people who understand what they are and how common they are, I suspect pseudogenes and ERVs would be enough. (Additionally, I am rather fond of the idea of having 30,000 retroviruses in every one of my haploid genomes -- quite a collection!, or the idea that nearly fifty percent of my genome appears to be retroviral in origin [e.g., consists of retroelements].)
I'm sure this would be a fertile subject for creationist investigation, but it is off topic, so maybe you could start a new thread for it.
This message has been edited by Faith, 12-07-2005 12:00 PM

This message is a reply to:
 Message 205 by TimChase, posted 12-06-2005 2:16 PM TimChase has replied

Replies to this message:
 Message 240 by TimChase, posted 12-08-2005 9:50 AM Faith has replied

  
Faith 
Suspended Member (Idle past 1474 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 212 of 298 (266321)
12-07-2005 3:42 AM
Reply to: Message 205 by TimChase
12-06-2005 2:16 PM


Re: Ring Species
Sorry, duplicate post.
This message has been edited by Faith, 12-07-2005 12:01 PM

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Faith 
Suspended Member (Idle past 1474 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 213 of 298 (266322)
12-07-2005 3:44 AM
Reply to: Message 205 by TimChase
12-06-2005 2:16 PM


Re: Ring Species
Sorry, triplicate post.
This message has been edited by Faith, 12-07-2005 12:02 PM

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Faith 
Suspended Member (Idle past 1474 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 214 of 298 (266323)
12-07-2005 3:46 AM
Reply to: Message 205 by TimChase
12-06-2005 2:16 PM


Re: Ring Species
Sorry, quadruplicate post.
This message has been edited by Faith, 12-07-2005 12:02 PM

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Faith 
Suspended Member (Idle past 1474 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 218 of 298 (266367)
12-07-2005 12:13 PM
Reply to: Message 217 by mark24
12-07-2005 6:36 AM


Re: Ring Species
Faith,
So goes the theory, but if the processes that bring about speciation simultaneously reduce the genetic diversity that evolution requires (beyond the mere variation on given genetic allotments), and mutation turns out not to be a sufficiently effective counter to this subtraction process, then this theory of an open-ended evolution is falsified.
quote:
It's falsified if you can show that mutation isn't an effective counter.
Isn't this what I said? But just a point of logic: Whether I personally can show it or not, if it isn't an effective counter then it's falsified. Evolutionists really should be testing this.
This requires evidence. But then at the time that the population levels are crashing it probably isn't a counter, only afterwards.
If at all. And of course it requires evidence. But we have to start by getting the idea into people's heads. As Randman asked in Message 210 have evolutionists done the calculations to see whether mutation really can overcome the effects of the genetic-reduction processes?
Hall (Hall 1982) removed the ability for a single bacteria to metabolise lactose. He removed the genes that coded for the enzyme, the permease, & the expression control. As far as your scenario is concerned the situation could not reduce the populations diversity more, it was first reduced to a single organism, then even more was removed. All three functions re-evolved in the susequent grown culture.
Which doesn't suggest mutation to me, but something predictable from the genetic structure, therefore in a sense "built in."
Thus an entire system of lactose utilization had evolved, consisting of changes in enzyme structure enabling hydrolysis of the substrate; alteration of a regulatory gene so that the enzyme can be synthesized in response to the substrate; and the evolution of an enzyme reaction that induces the permease needed for the entry of the substrate. One could not wish for a batter demonstration of the neoDarwinian principle that mutation and natural selection in concert are the source of complex adaptations. [DJ Futumya, Evolution, ©1986, Sinauer Associates, Sunderland, MA. pp. 477-478.]
Not sure what you think this would prove? {AbE: This is just definitional word games.}
In other words, reduction of diversity to a single individual did not prevent evolution.
But that is most likely not evolution at all, meaning not mutation-driven, simply a feature of the genetic structure that isn't yet known. Correct me if I'm wrong but isn't mutation random? If a loss is regenerated so specifically how can we be talking about mutation or anything random at all? But if what is called mutation should turn out NOT to be random in its rare survival-enhancing manifestations, then it's something else, something built in, something given to the species for its ability to survive.
This message has been edited by Faith, 12-07-2005 12:19 PM
This message has been edited by Faith, 12-07-2005 12:21 PM

This message is a reply to:
 Message 217 by mark24, posted 12-07-2005 6:36 AM mark24 has replied

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Faith 
Suspended Member (Idle past 1474 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 219 of 298 (266368)
12-07-2005 12:16 PM
Reply to: Message 210 by randman
12-07-2005 3:28 AM


Re: good points
People do have the erroneous idea that somehow natural selection, genetic drift, migration and other "evolutionary processes" could lead to evolution, and the fact is that they do not, they work against the possibility of evolution.
quote:
This is a huge problem for evolution if you ask me.
Thanks for the support.
If this were acknowledged, if students weren't made to absorb this erroneous idea, we could go on to the next topic which is the only genetically additive process, mutation.
quote:
Have evos ever gone about to quantify the effects of the first set of factors with observed rates of mutation, one wonders?
I gather not from the way they are answering. Clearly this has to be the next step in this discussion.

This message is a reply to:
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Faith 
Suspended Member (Idle past 1474 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 222 of 298 (266419)
12-07-2005 1:42 PM
Reply to: Message 216 by Modulous
12-07-2005 5:59 AM


Re: Fecundity
I guess if ten offspring is fecundity, fine, I had in mind rather more than that. The question is still whether the mutations offset the subtractions, it can't merely be asserted that they provide a "massive increase" even with the aid of fecundity, considering that beneficial mutations are very few and far between and I could say in return that the selecting and reducing factors produce a "massive decrease" over time. Crashfrog claims he provided evidence for this a long way back and if you didn't comment on his evidence, would you please?
This message has been edited by Faith, 12-07-2005 02:12 PM

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Faith 
Suspended Member (Idle past 1474 days)
Posts: 35298
From: Nevada, USA
Joined: 10-06-2001


Message 225 of 298 (266482)
12-07-2005 3:45 PM
Reply to: Message 224 by mark24
12-07-2005 3:20 PM


Re: Ring Species
It has been tested, reducing a populations diversity to a single individual didn't prevent evolution.
I never said it would. That is no test. You are reading something of your own into the subject. It is only at the extremes of reduction that you'd encounter a complete inability to regenerate a (somewhat) diverse population. Some species have more genetic potential than others because of not having been subjected to the most extreme reductions.
But please don't reduce this conversation to bacteria. That's another whole subject. Let's talk about sexually reproducing animals. Take two offspring of the same parents and breed them and repeat the process with their offspring and so on, and they will still produce diverse offspring for some generations before the effects I'm talking about bring them to a genetic brick wall.
This message has been edited by Faith, 12-07-2005 03:48 PM

This message is a reply to:
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