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Author Topic:   What exactly is natural selection and precisely where does it occur?
Quetzal
Member (Idle past 5903 days)
Posts: 3228
Joined: 01-09-2002


Message 32 of 303 (389286)
03-12-2007 11:36 AM
Reply to: Message 1 by Fosdick
03-11-2007 1:49 PM


Thanks Hoot, for opening this topic. Although my position closely parallels AZPaul's (so repeating what he's already said would be pointless), I would like to emphasize a couple of points.
Yes, perhaps a new thread is more appropriate, because “group selection” and “individual selection” need to be differentiated from “gene selection” and “kin selection.” It must be confusing to MartinV and his ilk that Darwinian biologists can’t agree on exactly what natural selection is and where it occurs. And, unless you invoke the selfish-gene theory, the same quandaries can be raised about evolution itself.
One of the first problems I see is there appears to be some misunderstanding of what is meant by "natural selection". We can argue over whether or not the term is either useful or descriptive (I personally think it is neither), but it is one that has been in regular usage for 150 years since Wallace and Darwin first coined it, so we're pretty much stuck with it. Their attempt to differentiate "natural" vs. "human-directed" evolution is what is leading to many of the difficulties (as others have sort of noted). Unless we are going to postulate that humans are not "natural", then whatever we do to a population is indistinguishable from what the environment does to a population.
In essence, then, anything that affects the fitness of an individual organism is "natural" selection. The key word here is selection, not the adjective modifying it. Any filter that affects the survival, reproductive success, or reproductive rate of the individual members of a population is natural selection. Hence, when we talk about "sexual selection", or "kin selection" or whatever selection, we are referring to specific types of natural selection. The terminology can be confusing, I admit. However, when biologists/ecologists, and others of that ilk bandy those terms about, the whole edifice rests on the unstated understanding that in every case it is all natural selection.
There are, of course, non-selective forces. As we discussed in a previous thread, genetic drift, etc, don't rely on the actions of natural selection. This is probably why we often hear the formulation "evolution is the change in allele frequency in a population over time". This formulation allows us to include epigenetic factors, drift, etc, in the definition of evolution. Our discussion in THIS thread, IMO, should be limited to natural selection, however.
By definition, natural selection is the possible consequence of uneven reproductive success of individuals in a population. But this does not mean that natural selection necessarily operates on the individual or its population, even though the results may occasionally point in that direction. Looking closer, as did G. C. Williams, Wm. Hamilton, R. Dawkins, et al., the actual site of natural selection can often be seen at the level of genes and their alleles (i.e., genetic evidence of strategic altruism for kin survival).
I'm not sure why you feel that if natural selection refers to the factors relative to the reproductive success of an individual organism there should be any confusion here. As PaulK pointed out, in some instances it may make sense to discuss the contribution of particular genes or gene complexes to the survival of its organismal "packaging". After all, it is the gene, not the organism, that is the unit of inheritance. On the other hand when we're talking about selection writ large, to me it doesn't make sense to discuss "gene selection" except in the larger context of selective pressures on the individual organism. After all, there are (to my knowledge), no environmental factors that can reach inside an organism's body to directly affect a single gene or suite of genes without ALSO affecting everything else about the organism.
I think some of the problem arises from a misunderstanding of Dawkin's "selfish gene" concept - it's a problem he acknowledged, which is why he wrote The Extended Phenotype. Quoting:
quote:
I want to argue in favor of a particular way of looking at animals and plants, and a particular way of wondering why the do the things that they do...What I am advocating is a point of view, a way of looking at familiar facts and ideas, and a way of asking new questions about them. (Dawkins R, 1999, pg 1)
In short, Dawkins is saying here that the selfish gene concept is not a fact, but a way of looking at facts. I can think of a number of places where it is an exceptionally useful way of looking at facts - ethology, evolutionary developmental biology, etc, are all sciences well-served by the concept. However, I find it utterly useless for sciences such as ecology, conservation biology, population genetics, etc. In these latter, looking at the action of natural selection as it affects either organisms or whole species makes more sense. Therefore, probably from my own biases and experience, I find the use of the individual organism as the "target" of the selective filter to be the most relevant.

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 Message 1 by Fosdick, posted 03-11-2007 1:49 PM Fosdick has replied

Replies to this message:
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Quetzal
Member (Idle past 5903 days)
Posts: 3228
Joined: 01-09-2002


Message 48 of 303 (389557)
03-14-2007 9:53 AM
Reply to: Message 46 by AZPaul3
03-14-2007 1:57 AM


Natural Selection vs. Big Rocks
Natural Selection is all elements of an environment that impact an organism’s reproductive success. From changes in climate to big space rocks smashing into the planet, from the beaver’s dam that dries up the stream for the frogs 3 miles downstream to the brilliance or lack thereof of the peacock’s tail. All factors, even luck, good or bad, that impact an organisms reproductive success are naturally occurring, without purpose, guidance or forethought and have what we call a “selective” effect. Sexual selection is but one of these natural selective elements.
I bolded the part I have a quibble with. Although my points here may serve to confuse the issue more for those unfamiliar with it, I'm afraid I have to disagree with this characterization of natural selection. Setting aside for the moment the "genes'-eye-view" argument, selection is a filter that affects organisms based on their phenotype. I would argue that catastrophic natural disasters - either global or local - are not really subsumed under "natural selection". There has been a great deal of discussion over the years concerning the "whys and wherefors" of differential survival of specific taxa following large-scale extinctions. My personal opinion is that this survival owes more to luck than genetics. IOW, there is no true selective filter in operation. Meaning the frog whose stream dries up due to the beaver, or the continental fauna devastated by an asteroid are not being selected for or against. Their genotype/phenotype has absolutely no bearing on whether they survive or not (well, maybe in the case of the frog if there are individuals in the population more tolerant of a xeric environment, say).
I don't know if you get the chance to read much popsci, but one interesting book on this subject is David Raup's Extinction: Bad Genes or Bad Luck? (WW Norton 1992). Although I strongly disagree with many of Raup's contentions (including especially the "Nemesis Hypothesis"), he makes a good case for genetics having diddly to do with survival of taxa following a mass extinction.
Asteroids, in short, are not a selective filter acting on a genotype. They represent a field of bullets where the survival of any given taxa is due more to chance than selection. Yon butterfly may have the most perfect genotype/phenotype on the planet with all kinds of wonderful adaptations, but if a bird eats it before it reproduces, its genotype had nothing to do with it, and it is an evolutionary dead end.

This message is a reply to:
 Message 46 by AZPaul3, posted 03-14-2007 1:57 AM AZPaul3 has replied

Replies to this message:
 Message 51 by AZPaul3, posted 03-14-2007 11:45 AM Quetzal has replied

Quetzal
Member (Idle past 5903 days)
Posts: 3228
Joined: 01-09-2002


Message 65 of 303 (389597)
03-14-2007 2:05 PM
Reply to: Message 51 by AZPaul3
03-14-2007 11:45 AM


Re: Natural Selection vs. Big Rocks
Except a space rock caused such devastation as to exacerbate the extinction of Dinosaurs while, due to its phenotype, some small furry mouse survived. It passed right through this filter of Natural Selection without too much of a problem. I submit its phenotype was the reason why.
On the contrary, large numbers of "small furry mouse" taxa DIDN'T in fact survive the KT event. Whereas there is a lot of evidence that indicates various dinosaur taxa were in decline prior to the KT event, and the hypothesis that the asteroid finished them off seems pretty conclusive, there were too many vastly different taxa that survived the event to conclude that phenotype had any play in it. There is no identifiable thread that runs through the survivors - no particular phenotype gave any special advantages. This is one reason I like the "field of bullets" analogy. It derives from carnage of WWI battlefields. Picture 10,000 infantry charging across open fields in the face of entrenched machine guns. Individual ability, training, etc, has absolutely NOTHING to do with which ones of those infantry survive. It's pure luck of the draw. There's no selection; it really is random chance. The same goes for a bloody great rock falling on someone's head. Random events are NOT selective because the genotype/phenotype of the individual organism has no bearing on whether the organism survives or perishes - as PaulK noted, luck is not a component of natural selection.
As you alluded, some frogs survive drought. Some bury themselves in the mud before it dries and, in effect, hibernate until moisture is again present. I submit their phenotype allowed this capability and those species of frog, or even individuals of this species of frog, without such capabilities in their genes, in this instance, did not pass through this filter of Natural Selection. They were "selected" out.
Right. The frog thing was probably unclear in my post. I was visualizing a sudden drying of the stream - and probably stretched the analogy further than it should have gone.
Now to the butterfly. This touches on where this discussion wants to go.
After, hopefully, establishing the mechanism of Natural Selection operates on the level of the transient individual, now we can look at what this crucible has left us. Why do more than half of the cousins of your poor eaten butterfly survive? Why did this differ from the meager 20% of survivals for this other butterfly population? Different coloration? Different feeding habits? Different types of predators? What is similar about them? What is different? What is different/similar in the phenotype? And, ultimately where this discussion wants to go, what is different/similar in the genotype and why?
Yep, them's the questions. Those are ALL examples of natural selection - the filter that "weeds out" the less successful organisms.
My butterfly example was another poor analogy, I guess. What I was trying to illustrate is that regardless of all the wonderous adaptations and neat genes the now-eaten butterfly may possess, the random event of a bird managing to snack on it had nothing to do with them. It got eaten regardless of the adaptations. This probably wasn't a good analogy of a random event - unless it was simply the fact that the bird got lucky...
I submit that everything that impacts an individual’s reproductive success is an element of Natural Selection from beaver dams to space rocks and all in between including just dumb luck. The interesting stuff is what comes out the other end.
As PaulK noted, I'm not sure but what you are confusing natural selection - the sum total of the biotic and abiotic factors that affect individual reproductive success - and the results of this selective filter (e.g., evolution). The two are not synonymous. A bloody great rock may eliminate enough taxa to provide the wide-open spaces necessary for ecological release, but it isn't selection in action. Hope this helps rather than obfuscates.

This message is a reply to:
 Message 51 by AZPaul3, posted 03-14-2007 11:45 AM AZPaul3 has replied

Replies to this message:
 Message 119 by AZPaul3, posted 03-16-2007 1:15 PM Quetzal has replied
 Message 122 by Cthulhu, posted 03-16-2007 3:24 PM Quetzal has replied

Quetzal
Member (Idle past 5903 days)
Posts: 3228
Joined: 01-09-2002


Message 67 of 303 (389600)
03-14-2007 2:22 PM
Reply to: Message 55 by Fosdick
03-14-2007 12:15 PM


Re: The evolving individual?
Qeutzal, let ask you this: Did NS occur in a individual frog so that, during its lifetime, it evolved into a reptile? Or did 'Eve', during her lifetime, evolve by way of NS from an ape into a human?
Of course not. Evolution (what you describe here), operates at the level of population, not individuals. Natural selection, on the other hand, is an individual selective filter. Evolution operates ONLY over generations. Selection operates during the individual's lifetime.
I think you are others here are placing too much emphasis on what an individual can do in the course of biological evolution. Since no individual survives long enough to actually experience NS, then the operational site of NS must be somewhere or something else.
Individuals have nothing to do with evolution, because individuals don't evolve. Additionally, your second statement is also incorrect: individuals ARE the victims of natural selection, which factors serve to either promote individuals who have some selective advantage in the current environment by increasing their chance of reproduction and hence passing on this advantage to their progeny, or select against individuals who are "less fit" in the particular environment. Although it isn't an "all or nothing" affair, and leaving aside the gene-centric or organism-centric viewpoints, this is the basic definition of natural selection.

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Quetzal
Member (Idle past 5903 days)
Posts: 3228
Joined: 01-09-2002


Message 72 of 303 (389611)
03-14-2007 3:28 PM
Reply to: Message 71 by Modulous
03-14-2007 3:15 PM


Re: Genes get selected to stick around.
Yes - but not all phenotypical characteristics are hereditry. The only things that gets passed on are the genes. Because the genes getting passed on decide a large part of the phenotype, the phenotype - to some extent survives. It might be useful to think of phenotypes as being selected like this - but it is not individuals getting selected.
I think you and crash are essentially saying the same thing in different ways. I'm pretty sure he acknowledges that genes determine phenotype to a large extent, and that they are the units of inheritance, and thus the part that is of evolutionary significance. On the other hand, individuals most certainly do "get selected". Without the ability to pass on their genes - which has everything to do with phenotype - genotype is immaterial. The filter of natural selection doesn't pick out a particular gene or suite of genes on which to have an effect. It selects the totality of the phenotype - i.e., the individual organism - to operate on. An organism might have several excellent genes, but if the overall phenotype is less fit than another set of genes (individual), then they may not get passed on to subsequent generations. This is one of the reasons I don't fully agree with Dawkins' concepts. Yes, in some ways (especially when you're talking generational timescales) to talk about how suites of genes get passed down. However, unless you can demonstrate any selection pressure that operates at the level of the gene in "real time", then I'm not sure the concept holds.
It is the genes that get selected. They get selected based on how well they cooperate with other genes in the pool to create succesful phenotypes. Those alleles that do not cooperate to create succesful phenotypes get selected out (their frequency decreases), those that do cooperate well with the other genes in the pool, get selected in.
You just stated it: successful phenotypes are what get passed down the generations. Why? Because natural selection operates on the phenotype, not the genotype. This is where people tend, I think, to misunderstand what Dawkins is talking about. He's using the "cooperative gene" and "selfish gene" concepts to show - not how, which is what natural selection is all about - but why.

This message is a reply to:
 Message 71 by Modulous, posted 03-14-2007 3:15 PM Modulous has replied

Replies to this message:
 Message 75 by Modulous, posted 03-14-2007 4:04 PM Quetzal has replied
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Quetzal
Member (Idle past 5903 days)
Posts: 3228
Joined: 01-09-2002


Message 82 of 303 (389656)
03-14-2007 7:01 PM
Reply to: Message 75 by Modulous
03-14-2007 4:04 PM


Re: Genes get selected to stick around.
Mod - I understand Dawkins' concept. I have also said that a "genes-eye-view" of evolution is both useful and, over the long term, makes sense. I thoroughly "get" the idea that we can look at evolution in terms of the success of genes to get themselves passed down the generations. On the other hand, we're not talking here about evolution per se, we're talking about natural selection - those factors that influence whether or not those "optimal" genes get transmittted. In that case, I submit that selection doesn't operate on genes, it operates on individual organisms, during their very own lifetimes. Although some selection pressures will operate over generations (it's how adaptation occurs in the first place, as you know), for the purposes of understanding those selection pressures we lump under the rubric of natural selection, the only thing that makes sense is to look at the effects of those factors on the individual organism. After all, it's the organism as a whole - good, bad, and indifferent genes - that has to survive to reproduce.
I understand why some people don't agree with Dawkins, but everytime I hear the 'other side', I hear no compelling reason to change my mind on the position. I'm not sure I know what 'real time' has to do with it. Perhaps we sould think of the selection pressure being demonstrated with the rate of change of the frequencies of various alleles?
It's not really a question of "sides". It's really more a question of looking at the facts in a different way. Both "sides" have their uses. Population geneticists would probably agree with Dawkins. On the other hand, I don't find this view particularly useful for understanding ecosystem-level interactions, especially extinctions - one of my particular concerns. Nor is it particularly useful for any other aspect of conservation biology or ecology that I can think of. Perhaps, as I mentioned, it's a question of personal biases and experiences. All I see it as is a nice sort of theoretical way of looking at the question.
But only the parts of the phenotype that is deteremined by the genotype (discounting epigenitics for the moment), and not all of that gets selected. The phenotype would only be selected for if it were perfect clone of its parent, but this rarely happens. It is only the phenotype in the broad strokes that can be viewed as being selected, but that might be just an emergent observation. We could say that white bunnies are selected for in snowy climate, but that's not really what is happening. It is the genes that cooperate towards creating white bunnies that are being selected for.
Right, I understand that. Again, however, you're not talking about natural selection as such, you're talking about evolution. Since the topic is "at what 'level' does natural selection operate, I think that the genes-eye-view is inappropriate. Perhaps I'm making a false distinction: evolution vs. one of the key mechanisms of evolution.

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Replies to this message:
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Quetzal
Member (Idle past 5903 days)
Posts: 3228
Joined: 01-09-2002


Message 134 of 303 (390189)
03-19-2007 9:46 AM
Reply to: Message 119 by AZPaul3
03-16-2007 1:15 PM


Re: Natural Selection vs. Big Rocks
The mechanism, the nuts-and-bolts, of Natural Selection operates on the level of the individual organism. I define Natural Selection as any event, I emphasize, any event, that impacts, for well or ill, an organisms reproductive success.
I understand that you define it that way. However, perhaps you could identify the "selection" element in a bloody great rock falling out of the sky? How does a particular adaptation in a given population of individual organisms - whether optimal for their current environment or merely "good enough" - allow those individuals to survive such an event? Catastrophic extinction, which is inherently a random process (the opposite of selection), should not be subsumed under the accepted rubric of natural selection - because, in essence, there is no "selection". You die, or you don't, on the luck of the draw. As PaulK mentioned, luck isn't a part of natural selection.
I will say that ecologists and conservation biologists have long sought a solid, theoretical construct that answers the "why" question in extinction. Just like with bioinvasion, all of the theories proposed to date are weak, unfortunately. We very often understand "what", and can in many local cases figure out post facto why, but a general theory of extinction has proven elusive.
Chicxulub did more than make some largish waves, throw some dirt into the air and clobber a whole big bunch of poor slobs standing out in the open. It changed the environment for the ensuing millennia. Environment change has always been (unless I missed the memo) a major Natural Selection event. This “field of bullets” was an event of Natural Selection just as surely as an ice age, the rise of a better predator or the spread of an invasive microbe.
I disagree. The bloody great rock was certainly a "natural" event. But was it "selective"? One possible source of confusion (although I don't know if that's the case here), is that we often bandy about the phrase "selectivity of a mass extinction". The problem stems from the use of selectivity in this context. We are NOT talking about Darwinian selection - e.g., an environmental filter. Rather, we are using an anthropomorphic analogy (for lack of a better term), to describe how it appears that a mass extinction randomly "selects" certain taxa for destruction while leaving others untouched. This one but not that one. Kind of like a mad god's finger. If we ever come up with a General Theory of Extinction, I think this confusion will disappear.
Even on a gene’s-eye-view basis, the environment is the availability of resources, like the available pool of alleles. Changes to this environment are events of Natural Selection. Johnny’s football accident, the drunk driver, the pure bum luck of getting hit in the head with a comet, changes the environment in that it, first from the individual perspective, lessens the resources for reproductive success by taking out the individual itself, and from the gene’s-eye-view, lessens the available pool of alleles for reproduction. Like in my Bob and Hox example, Bob’s superior talents are no longer available in the environment. The environment has changed. The unlucky event, your “field of bullets,” was an event of Natural Selection and the effect of adapting to this changed environment is Evolution.
Right, as far as it goes. However, remember that in a mass extinction event we are not talking about individual death based on an individual's lack of a particular set of characteristics. We're talking about entire taxa being obliterated. As we both (I think) agree that natural selection operates at the individual level, how can an event that affects entire lineages be subsumed under this? Individual adaptations have absolutely no bearing on survival here (which is what natural selection is all about, n'est-ce pas?). Those individual members of surviving taxa which are capable of survival/reproduction in the new environment will - as per Darwinian evolution based on differential reproductive success (e.g., natural selection) - "inherit the earth" (but see, for example, the "Dead Clade Walking" hypothesis).
Quetzel, I love your “field of bullets” analogy. The visual is striking and certainly appropriate. This is one of the best analogies I have seen in many a month. Realize that it is now firmly ensconced within my repertoire to be used as the occasions warrant. Thank you for the gift.
You're welcome. I only wish I could take credit for it. It's one of the standard models used in ecology to describe extinction patterns. Along with this model, we have the "fair game" model where natural selection works to eliminate the less fit (the standard Darwinian model); the "wanton" model where individuals survive based on purely random factors - and may in fact be less fit than those who DIDN'T survive (mostly used on local scale); and the "gambler's ruin" model (where taxa with fewer sub-elements are more likely to go extinct); and the "mass extinction" model where everything in a particular area gets obliterated. This latter is an unfortunate choice of terminology because both field of bullets and wanton models can also be used to describe the extinction pattern of what we normally call mass extinction. I prefer the term "first strike" for this one, just to avoid confusion. Unfortunately, I haven't been promoted to the terminology police squad.

This message is a reply to:
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Quetzal
Member (Idle past 5903 days)
Posts: 3228
Joined: 01-09-2002


Message 135 of 303 (390196)
03-19-2007 10:24 AM
Reply to: Message 122 by Cthulhu
03-16-2007 3:24 PM


Re: Natural Selection vs. Big Rocks
Sorry, O' tentacled one. I nearly missed this reply.
There is an identifiable thread that runs through the survivors. All massed less than 5 kg on land, and 25 kg in water.
This is indeed the popular characterization of the result of the K-T event, at least in North America. And as a first approximation to get across the idea of the devastation caused by the K-T, or P-T events or any other of the "big five" events, it's really very good. It is also, like many scientific "sound bites", not entirely accurate when you look at the details. Just to name two taxa that "give the lie" to this hyperbole that are being sort-of discussed on another thread, look up the crocodillians (terrrestrial) and sharks (marine).

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Quetzal
Member (Idle past 5903 days)
Posts: 3228
Joined: 01-09-2002


Message 140 of 303 (390243)
03-19-2007 2:26 PM
Reply to: Message 137 by Fosdick
03-19-2007 1:40 PM


Re: The naturally selected individual(?)
I happen to agree with Modolous, mostly, if more emphasis is placed in allele frequencies. Individuals don’t get naturally selected, or selected for, not in the Darwinian sense.
How do you figure? This is precisely the definition of natural selection Darwin and Wallace developed.
But there is another issue here: Does natural selection, in and of itself, amount to evolution? Or does natural selection only lead to eventual evolution?
NO! How many times do you have to be told? You even quoted us in this post on this subject! Evolution is the result of natural selection operating on individual members (or suites of genes if you like Mod's construction better) over generations in a population. Natural selection is (one of) the mechanism(s) of evolution. It is NOT evolution. Populations evolve. Individuals (or genes) are selected. There is no disagreement here.
I’ll think Darwin saw natural selection as the actual evolutionary event, or as its cause, because he explained it (standing on Malthus’s shoulders) as an active mechanism or agency of evolution.
Good grief - you even state it here! It is the agency or mechanism of evolution! Why do you keep repeating the nonsense (and apologies, but that's what it is) about individuals evolving if subject to natural selection?
I don’t agree that natural selection and evolution are NOT the same thing. Indeed they are, if one views NS in an active context. Why would Darwin even bring up the idea of natural selection if it didn’t explain how biological evolution works in the active sense?
And here again, for some reason, you lose it. I really and truly do not understand what element of the concept you're not grasping, Hoot. I really don't. Setting aside for the moment whatever it is you're trying to convey with the "active context" and "active sense", which, since they aren't terms used in science as far as I know, are inherently meaningless (you'll really need to expand/explain what you're trying to say), Darwin absolutely DID use natural selection as the explanation for biological evolution. In fact, it was his (and Wallace's) key insight into the mechanism of evolution - natural selection - that was so revolutionary. Up until then, various folks from Lamarck to Erasamus Darwin could see that evolution occurred - but nobody until Darwin came up with a how that fit all the facts.

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 Message 137 by Fosdick, posted 03-19-2007 1:40 PM Fosdick has not replied

Quetzal
Member (Idle past 5903 days)
Posts: 3228
Joined: 01-09-2002


Message 150 of 303 (390308)
03-19-2007 6:30 PM
Reply to: Message 149 by Modulous
03-19-2007 6:14 PM


Re: clarification
Mod's article writes:
Obviously, natural selection cannot choose replicators directly, because it does not operate directly on DNA, but rather on the phenotypic effects expressed by genes. Therefore, natural selection does in a sense select at the organism level, because it makes proxy selections based on the adaptation of the phenotypes of various competing organisms. Natural selection operates directly on phenotypic adaptations and thus indirectly on the genes responsible for those phenotypes.
Heh, this is what I've been saying all along - although obviously not as well. The last paragraph in your quote also sums up well - the genotype is indeed what gets replicated (outside of clonal species, of course). That is never in question. Throughout I've been talking about what gets selected - not what gets replicated. Perhaps that's where our miscommunication arises?

This message is a reply to:
 Message 149 by Modulous, posted 03-19-2007 6:14 PM Modulous has replied

Replies to this message:
 Message 166 by Modulous, posted 03-21-2007 12:10 PM Quetzal has replied

Quetzal
Member (Idle past 5903 days)
Posts: 3228
Joined: 01-09-2002


Message 170 of 303 (390696)
03-21-2007 3:36 PM
Reply to: Message 166 by Modulous
03-21-2007 12:10 PM


Re: clarification
Mod,
I'm going to skip the cultural evolution piece, because that's not what we've been talking about in this thread, and I really think that the topic will derail things too much. I have my own views of cultural evolution, but they would be better discussed on another thread. Suffice, for the moment, that we are primarily in agreement there - but I feel there is little relevance for natural selection.
So in my view - the phenotypes themselves are what decides if a gene or its alleles get selected or not. Thus - genes are selected for by virtue of the phenotypes they on average help create. Genes that increase fecundity can still be selected against despite the fact that from an individual point of view it looks like they are being selected for. Genes that decrease fecundity can be selected for, even though it looks like the individual is being selected against.
We are not in disagreement. However, the reason I keep coming back to the phenotype (the individual sum of genotype and environment), is that selection can operate on non-inheritable characteristics. Although these characteristics may have no bearing on evolution, they DO prevent or enhance the reproduction of the individual. Which is how genes get transmitted. Since the selection part of natural selection refers to the filter created by the totality of the biotic and abiotic factors affecting the organism in its particular environment, this would, perforce, have to include things that operate only at the individual level - regardless of genotype. For example, an organism that is damaged but not killed by a predator may have difficulty reproducing, no matter what its genotype may be. An epiphyte overburden may exceed the structural tolerance of a forest emergent, causing it to fall and bring down multiple neighbors - in spite of their genotype. The problem I have with the gene's-eye-view is that it ignores the stochastic events that may change the allele frequency of a population - by eliminating those individuals who carry them - it is an inherently deterministic view of natural selection.
Now, before you go ballistic, please remember that I am NOT talking about evolution, only natural selection. Since we both agree that evolution occurs at the level of population, then I assume we have no disagreement that talking of the change in allele frequencies - the result of natural selection (among other things) - in a population is evolution. In this sense, it is absolutely imperative to use the gene's-eye-view, because that's what evolution is all about - adaptation of populations to changes in the environment (again, among other things).
Thus: it is often useful to discuss these things in terms of individuals, to really get a grip on what is happening, the genecentric model is vastly superior.
Yes, when discussing evolution.

This message is a reply to:
 Message 166 by Modulous, posted 03-21-2007 12:10 PM Modulous has replied

Replies to this message:
 Message 174 by Fosdick, posted 03-21-2007 8:39 PM Quetzal has replied
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Quetzal
Member (Idle past 5903 days)
Posts: 3228
Joined: 01-09-2002


Message 171 of 303 (390738)
03-21-2007 6:43 PM
Reply to: Message 166 by Modulous
03-21-2007 12:10 PM


Re: clarification
Okay, Mod. I'm clearly not explaining myself well. That being the case, let me post a few quotes from people who are MUCH smarter and better at explaining things than I am.
quote:
What is exposed to natural selection is not the individual gene or the genotype, but rather the phenotype, the product of the interactions of all genes with each other and with the environment. (Ernst Mayr, Evolution and the Diversity of Life, Belknap Harvard, 1997, pg 318)
quote:
Natural selection acts on phenotypes, regardless of their genetic basis, and produces immediate phenotypical effects within a generation that can be measured without recourse to principles of heredity or evolution. In contrast, evolutionary response to selection, the genetic change that occurs from one generation to the next, does depend on genetic variation. (Lande R, Arnold SJ, 1983, "The measurement of selection on correlated characters", Evolution, 37:1210-1226)
quote:
Evolutionary biologists differ on whether or not the definition of selection should require that the classes differ genetically. Some authors...define selection as a consistent difference in fitness among phenotypes, acting within a single generation. Whether or not it alters the frequencies of phenotypes in the next generation depends on whether and how the phenotypical differences are inherited. The change in the population from one generation to another is termed the response to selection. Authors who advocate this phenotypical definition distinguish the response, which is solely a matter of inheritance, from differences in survival and reproduction, which constitute selection itself. (Futyma DJ, Evolutionary Biology, Sinauer, 1998, pg 349. Emphasis in original)
I'm one of those who advocate the distinction between selection - which is against phenotypes - and the evolutionary response to selection - which is based on genotypes. I hope that makes my position a bit clearer.
Edited by Quetzal, : Kuz I kant spel

This message is a reply to:
 Message 166 by Modulous, posted 03-21-2007 12:10 PM Modulous has not replied

Quetzal
Member (Idle past 5903 days)
Posts: 3228
Joined: 01-09-2002


Message 175 of 303 (390821)
03-22-2007 7:30 AM
Reply to: Message 174 by Fosdick
03-21-2007 8:39 PM


Re: clarification
Quetzal, I am pretty clear about the way you differentiate natural selection from evolution. I'll have to agree with you, mostly, but I have a few more questions.
I thought you said Mod was "right" and the rest of us were full of it (or words to that effect). Fickle, aren't you?
Before I go any further, I want to emphasize that neither Mod nor I are "right" in the sense that the other perspective is "wrong". As Percy pointed out, these are just two different ways of looking at the facts. Indeed, both perspectives are "right". It all depends on what you're trying to measure (or describe). For me, conceptually, isolating selection as in the phenotypical definition of selection is more useful when discussing what happens in a given generation. However, when describing the effects of selection as it pertains to evolution, the gene's-eye-view is the more relevant - because it describes the result of selection over evolutionary timescales. This is, in essence (and Mod can correct me if I mis-state), the only difference between the two. It's really a fairly esoteric disagreement.
Are you saying that evolution cannot happen at other levels besides the population?
No. The population is the fundamental element of evolution. It makes no sense to talk about evolving individuals, or for that matter the arbitrary groupings we call species, genera, etc, except in the abstract. However, it is quite useful to talk about gene lineages evolving. In this, Mod and I are in 100% agreement, and the genecentric view provides a clearer picture of what is happening. The argument on this thread is about selection, not evolution.
Do you mean only speciation?
In what sense? I'm not sure I understand the question. Please clarify what it is you are asking.
Why can't traits (even a single phenotype/genotype) evolve, as is claimed to be the case in microevolution?
Traits DO evolve. Single characteristics, suites of genes, etc, all evolve in response to long-term selection pressures. I'm not sure where this question comes from. That is the definition of evolutionary response to selection. I even quoted it above. As long as the differences are inheritable, then phenotypes, genotypes, single genes, polygenes, etc, all can evolve. And by the way, I absolutely loathe the term "microevolution". It's all evolution. The arbitrary distinction serves no useful function outside of paleontology, in my opinion.
I think for some reason you are still conflating "natural selection" with "evolution". As just about everybody participating in this thread has stated about a million times, they are two distinct, separate concepts. Natural selection is one of the engines that drives evolution. It is NOT evolution. It is a mechanism of evolution. The motor is NOT the car. Let's let ol' Douglas Futuyma (yeah, I know I mis-spelled his name in the citation above, it's too late to go back and re-edit that post. Sue me.) state it (from further down the page I cited previously):
quote:
For our purposes, we will define natural selection as any consistent difference in fitness (i.e., survival and reproduction) among phenotypically different biological entities. The entities may be individual genes (which must have some phenotypically variable property if the differe consistently in fintess), groups of genes, individual organisms, populations, or taxa such as species. (Although we have adopted a phenotypic definition, we will almost always discuss the fitness of phenotypes that are inherited to at least some degree, because selection has no evolutionary effect unless there is inheritance.) (Futuyma 1998, op cit. Emphasis in original).
Maybe it's the idea that natural selection can occur without evolution, even microevolution, taking place. So, is it correct to say that natural selection is something that manifests in a population having differential reproductive success amongst its individuals, causing evolutionary effects ranging from zero to speciation?
What? I think you're still confusing selection with response to selection. Natural selection is basically just a seive that "sorts" individual organisms based on some trait or characteristic (or suites of traits or characteristics). This sorting may affect the individual's survival, reproduction, reproductive rate, etc. In other words, the trait or whatever impacts the individual's fitness in its current environment. That's all.
The response to this sorting, whether we look at it from a populational standpoint OR from a genecentric standpoint, is evolution. Speciation is one form of evolution - one of the directions evolution can take.
Are you saying that the action of NS may have no effect on the evolution of a population?
Yes.
Are you saying that natural selection sort of lurks in almost every population, causing evolution to occur only on occasion when the selection pressure gets too high? I guess I'd have to agree.
No. The seive is always operating. The "sorting machine" of natural selection is always "on". The key thing to remember is that in reference to evolution, it is only when the phenotypical effects of NS are inheritable that NS drives evolution. This latter point, by the way, is the basis for the "loophole" that allows NS to promote traits that are actually less fit that Mod mentioned.
1. Doesn't your view of natural selection obviate the "selected for" aspect of the concept? That is, nothing could be "selected for" when natural selection is merely the occasion of differential reproductive success (with its evolutionary effects ranging from zero to speciation).
No. "Selected for" (i.e., selected because) is precisely what the seive does. It sorts organisms based on (a) particular trait(s). There may be selection of some other trait that the organism also posesses - but simply because that other trait also passed through the seive at the same time - not because the seive was "set up" to filter that other trait. Natural selection ISN'T the "occasion of differential reproductive sucess". That's the response to selection (sort of - although that's a rather poor way of describing it).
2. This absurd idea, not yours but Chiro's, that natural selection happens even when there is no differential reproductive success. What? This one is hard for me to swallow.
What do you mean, "absurd"? Chiro said precisely the same thing I said. You can't agree with me and disagree with Chiro, since we merely used different words to say the same thing. Maybe you need to re-read Chiro's post in light of what I've said? Again, it seems to boil down to "selection" vs. "response to selection", n'est-ce pas? Understand the difference?

This message is a reply to:
 Message 174 by Fosdick, posted 03-21-2007 8:39 PM Fosdick has replied

Replies to this message:
 Message 179 by Fosdick, posted 03-22-2007 12:57 PM Quetzal has replied

Quetzal
Member (Idle past 5903 days)
Posts: 3228
Joined: 01-09-2002


Message 234 of 303 (391295)
03-24-2007 11:52 AM
Reply to: Message 176 by Modulous
03-22-2007 9:21 AM


Re: clarification
Wow. This thread has definitely moved on since the last time I was able to participate. I don't want to go back and rehash old ground, but I would like to make a couple of final points and/or clarifications, if it's not too late.
However, all selection is natural - potentially making natural selection is a hopeless term. The only other option is for supernatural selection, which is beyond our scope. When natural selection is usually discussed, the general implication is that it is being discussed in the context of biological evolution. Sometimes it is being discussed in the context of non-biological evolution. Evolution is usually the subject matter.
Right. I'm not sure why you brought this up, since it's not a point of disagreement. Further up-thread, I mentioned to Hoot that I felt that the term "natural selection" was a poor one, precisely for the reason you mentioned - all selection is natural. I also mentioned to him that the terms "natural" and "artificial" have been in constant use for ~150 years, so it's unlikely that we're going to see the last of them.
As to the bolded part, I don't disagree - normally when we are discussing NS, we're discussing it in terms of evolution. Perhaps it's only because we interpret the purpose of this particular thread differently, but I was under the impression that we were trying to discuss NS more or less in isolation - not evolution. After all, the original question was: "What exactly is NS and precisely where does it occur?". Evidently we've been discussing two different things - and that may be why you're not understanding my position.
In my opinion, that is the problem I have with the individualistic view. The genecentric view shows us that 'bad luck' (being selected out in spite of the gene's good points) averages out over time. The genecentric view insists on a stochastic view: the genes which, on the whole (on average etc), help create sucessful phenotypes, are the genes which have a tendency towards increasing in frequency.
I understand the genecentric viewpoint well. It is nearly purely a way of looking at multi-generational selection response. It is not a good way of discussing NS itself - except in the context of evolution. I have stated multiple times on this thread alone that in the context of the adaptive response of taxa to NS (i.e., evolution), the gene is far and away the best (and I'd go so far as to say the only) way to cogently discuss the question.
Let me go a bit further, however, and make two points on "practicality". Hopefully you'll be a bit clearer on my perspective. My discipline is focused on discerning, describing and evaluating the interrelationships of whole organisms to one another and to their environment. As such, we are concerned with phenotype, and outside of the context of population dynamics (i.e., response), in many cases it doesn't even make sense to talk about genetics. In fact, we most often don't even consider the individual organism - we're concerned with populations, communities, or entire ecosystems (c.f., the subdisciplines of macroecology, landscape ecology, etc). One of the things that goes along with this is trying to understand selection pressures in isolation from the organisms being affected. It doesn't matter whether these pressures are a bloody great rock or fluctuations in a local microclimate. Therefore, it is more "natural" for me to think about selection (not evolution) in terms of the effects on individuals during their lifetimes, than the effects on populations over evolutionary or generational timescales - and to describe NS in that context.
The above brings me to a second, subsidiary point that may have some relevance for this thread. You have stated repeatedly that you feel the genecentric view is "easier" to use to explain NS to those without a biology background. I very much disagree. People (erm, non-biologists anyway) don't walk outside, look around their backyards, and see genes. They see individual plants and animals. I have led enough natural history ecotours, and given enough presentations to non-scientists, to have learned that the best way of providing simple illustrations of complex concepts (from the effects of ecosystem degradation to symbiosis to adaptation and evolution), is by couching the explanation in terms that people can intuitively grasp. In other words, discussing NS in terms of organisms. The genecentric view merely introduces an additional level of abstraction that can get confusing (as can be seen on this thread). If the purpose of threads such as this one is to describe NS to folks who don't have a bio background, then I submit that the individual organism is the best way to do it.
If I was talking to scientists, then I would use whichever viewpoint best illustrated whatever point I was trying to make, at whatever level was appropriate. And if I was describing evolution, then I would use (and have used) the genecentric position - because that's what evolution is all about.
Hope this clarifies.

This message is a reply to:
 Message 176 by Modulous, posted 03-22-2007 9:21 AM Modulous has replied

Replies to this message:
 Message 250 by Modulous, posted 03-24-2007 2:36 PM Quetzal has replied
 Message 252 by Modulous, posted 03-24-2007 4:01 PM Quetzal has not replied

Quetzal
Member (Idle past 5903 days)
Posts: 3228
Joined: 01-09-2002


Message 235 of 303 (391298)
03-24-2007 12:19 PM
Reply to: Message 179 by Fosdick
03-22-2007 12:57 PM


Re: clarification
Hi Hoot,
If you still have questions on anything else in my post 175 let me know. Since this thread has moved on quite a bit, I don't want to waste what little time is left. I would like to try and clarify one point, however.
I think you are using the sieve metaphor incorrectly. If natural selection can be seen as a sieve, then its filtering action works ONLY by disturbing a condition we understand to be ”evenly distributed reproductive success across a population’, n'est-ce pas? Understand the difference? If there is no disturbance of evenly distributed reproductive success across a population there is no natural selection. Period. Your sieve is turned off. Do you wish to change the definition of natural selection to suit your needs? You need to explain how natural selection works as a sieve even when there is no natural selection.
Like any metaphor, we've got to take it with a grain of salt, and be careful of how far we push it. Here is a very simple illustration/explanation for NS that I have used in the past, that may explain what I was trying to get across. Remember, please, that I used the seive analogy in response to your question:
Doesn't your view of natural selection obviate the "selected for" aspect of the concept?
They used to sell a toddler's toy (I think it was one of those Fisher-Price things), which consisted of a clear plastic cylinder divided vertically into separate compartments by plastic plates with different size holes. You put a bunch of different colored and different sized plastic marbles in the top, shook the thing, and the marbles cascaded down through the toy. The marbles got sorted by size, with the biggest staying at the top, and the littlest tumbling through the various holes and ending up at the bottom. The rest are sorted by size to the different levels. Let's say that all the littlest marbles are also red. The toy "selected" small, red marbles, in other words. However, it didn't select for red color, it selected for size. There is selection of red marbles, but only because all the red marbles are also small. Thus the individual selection filter doesn't "obviate the selected for" aspect. It actually explains the difference between selection for a particular trait and selection of un-related traits.

This message is a reply to:
 Message 179 by Fosdick, posted 03-22-2007 12:57 PM Fosdick has replied

Replies to this message:
 Message 237 by Fosdick, posted 03-24-2007 12:41 PM Quetzal has replied

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