I'm pretty sure that individual organisms exist. And I can accept theories of reproductive isolation that show that species really exist.
If you placed two unknown organisms in front of me, I could form a reasonable judgement on whether they're distinct individuals or not, although that may be difficult. I could try to mate them together, and could consequently also make a judgement on whether they're different species or not.
But I can't think of any experiment that might let me decide whether they are different genera, supergenera, families, kinds, baramins, what have you. As far as I am concerned, I deal with individual organisms which may or may not be reproductively isolated from each other and which can be organised cladistically into a hierarchical structure.
The individual and the species might be real distinct biological entities based on our understanding of gene flow and population genetics. Any taxonomic hierarchy above that level is suspect, but might be useful for various reasons. But those higher taxonomic levels are not real biological entities.