The Columbiea Ecyclopedia entry is quite reasonable, and distinguishes Haeckel's ideas from the earlier ideas of Von Baer. You can't sensibly suggest that Von Baer proposed his ideas as a watered down version of Haeckel, when Haeckel's version of the biogentic law was discredited - nor, even, can you reasonably suggest that Von Baer was motivated by a desire to prop up Darwinian theory.
And yes the "gill slits" ARE the same basic structure in human and fish embryos and are a legtimate example of Von Baer's version of the "biogenetic law".