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Author Topic:   Are human tails an example of macroevolution?
bernd
Member (Idle past 4011 days)
Posts: 95
From: Munich,Germany
Joined: 07-10-2005


Message 50 of 61 (356876)
10-16-2006 1:58 PM
Reply to: Message 49 by Brad McFall
10-14-2006 6:23 PM


Re: Re:falsification of non-historical interpretation
Hello Brad,
Brad writes:
Is colinearity to be thought equivalent in insects/arthropods as in vertebrates
That depends on what type of colinearity you are talking about - spatial, temporal or quantitative. While in Drosophila only spatial colinearity of hox genes has been described, in mammals we find also temporal and quantitative colinearity
Hox genes were initially identified in Drosophila as grouped regulatory genes, known as homeotic genes. They encode positional information during development following the colinearity rule, that is, their physical location in the cluster parallels the physical order of their expression along the anterior to posterior (AP) axis of the developing embryo (Lewis, 1978). Some years later, their molecular characterisation in both Drosophila and vertebrates proved that they code for proteins that bind DNA through the homeodomain, a domain of 60 highly evolutionarily conserved amino acids. Furthermore, mammals have the same clustered chromosomal organisation, where four copies of the Hox cluster, homologous to that of Drosophila, were found. Transcriptional analyses performed on sectioned and whole-mount embryos subsequently demonstrated the conservation of the colinearity rule (McGinnis and Krumlauf, 1992). So it seemed that Hox genes might provide a common molecular representation of the body plan at an early stage of the development of all animals. This is referred to as the phylotypic stage, during which embryos from distinct species tend to resemble to each other (Slack et al, 1993). Consequently, it was expected that the Hox gene cluster might have had this crucial developmental role even in the common ancestor of all bilaterally symmetrical animals.
However, in vertebrates, the spatial colinearity rule turned out to be only part of the story. In mammals, it was shown that the temporal order of activation of the Hox genes during development also corresponds to the order that these genes are arrayed in the genomic cluster (Kmita and Duboule, 2003). This temporal regulation is not observed in Drosophila embryos, where Hox genes are split into two half-clusters and are activated simultaneously. Genetic manipulations in mice show that the clustered organisation of Hox genes is required to implement such a tight temporal control. In contrast, Hox clustering is not necessary to achieve a proper spatial expression in other numerous cases (see in Kmita and Duboule, 2003).
from Evo-devo: Relaxed constraints on Hox gene clustering during evolution
After quoting Gould about hox genes and their colinearity and as it seems disagreeing with his remarks, you ask:
Brad writes:
Do we see vertebrates with gain-of-function mutations having tails in the place of analogous arms and legs
No, we don’t, at least not in mammals. And why should we expect this? I have already posted a link to an article which explains the development of the mammalian tail. I quote the relevant part:
The mammalian tailbud, like that of zebrafish, exhibits developmental features congruent with both Holmdahl's and Vogt's ideas. The bud consists of a ball of histologically homogeneous tail bud mesenchyme overlain by a ventral ectodermal ridge (VER) at the caudal tip continuous with a more transient ectodermal groove rostrally (Grneberg, 1956; Gajovic & Kostovic-Knezevic, 1995). Grneberg (1956) was the first to point out the histological similarity between the tailbud and embryonic limb bud, and, by extension, the possibility that secondary inductive events (as seen in the limb; reviewed in Capdevila & Izpisua Belmonte, 2001) were involved in tail formation.
There is growing evidence to suggest that this is indeed the case. Grneberg & des Wickramaratne (1974) described a mouse mutant (vestigial tail) bearing an undeveloped tailbud with only traces of an ectodermal ridge. This phenotype is copied by mutants for the genes T (Herrmann et al. 1990) and Wnt3a (Takada et al. 1994; Greco et al. 1996). More recently, Hall (2000) and Goldman et al. (2000) showed that ablating the VER results in tailbud regression and prevents somitogenesis and chondrogenesis in the tail.
The VER is also a genetically discrete structure, expressing specifically Msx1, Wnt5a, BMP2 and FGF17 (Lyons et al. 1992; Gofflot et al. 1997, 1998; Goldman et al. 2000). Although inductive functions have yet to be determined for each of these genes, their localized expression suggests that the VER, like the AER, is a source of molecular signals that regulate underlying bud mesenchyme. The VER, however, does not appear to employ extensive FGF signalling (as seen in the AER) and, accordingly, cannot regulate development when grafted onto limb bud explants (Goldman et al. 2000).
It is unlikely, however, that secondary development is the sole mechanism of tail formation in mammals. Several mapping studies have demonstrated that tailbud materials originate from the primitive streak and Hensen's node, suggesting that rostral developmental mechanisms may continue into the caudal portion of the embryo (Tam & Tan, 1992; Wilson & Beddington, 1996). Gofflot et al. (1997) provided more convincing evidence of this. They followed the expression of several gastrulation marker genes (Wnt5a, T, Hoxb1 and others) from the primitive streak and Hensen's node into distinct regions of the tailbud.
What we observe is, that a mution in Hoxb-13 results in an overgrowth of the tail, in other words most probably the function of this gene is to stop tail development.
Brad writes:
Could it not be that the is NO "colinearity" in the sense pre-existing but only a discrete "vectors" between ordinally different topographies from chromosomes not a morphogenetic gradient?
With regard to colinearity see above. Morphogenetic gradients have been described in great detail, have a look at the references in the chapters about Wnt and FGF8 gradient, described here or alternatively read this article
You continue with:
Brad writes:
Gould's presentation of Hoxd-13 praises the author "Dolle'et al.s'" "conscious linkage to classical data on heterochrony (SETH p 1103) but via a conscious reciprocation to gain-of-function mutations there are no "tails" extending from vertebrae but only ribs and lateral projections from segements more anterior than tails.
quote:
"Structure characteristic of more posterior vertebrae", "pair of ribs..."
Interesting, but I don’t see the connection to my argument. I have discussed the function of Hoxb-13 not Hoxd-13. (With regard to the function of the Hoxd cluster, see above under quantitative colinearity)
Brad writes:
I can tell you quite confidently, but it would take some time for me to document it that the word "anlage" is ambiguous in the technical literature of squamate morphogenesis. So the phrase "elongating" 'anlage' in you review article CONTINUES to raise some mental concern on my part, ie when one is only observing ecotypic expressions in misplaced somites.
There is no need to document this ambiguity in the literature about squamate morphogenesis. Relevant in the context of our discussion is the article I quoted. In which way is here the usage of “anlage” ambiguous?
Brad writes:
The word "vector" rather than "gradient" seems more consciously appropriate here, where, one does not deal with the the discontinuity between linear order on a chromosome and spatialization FROM that linear order(you could note that in a short page of text Gould uncharacteristically moves from the word "read" to "write"(Seth page 1099 (dealing with ?wolpert's notion of positional information)). It is not clear to me that the so-called 'segmentation' is not really a scalar magnitude only.
Could you please explain why you think that “vector” is more appropiate than “gradient”? And why do you think that segmentation is only a scalar magnitude? The hox genes in Drosophila specify the characteristic structure of each segment.
Do you work with Wnt3-a?
No, I’m not a biologist.
-Bernd
Edited by bernd, : spelling, inserted "not Hoxd-13" after "(..)function of Hoxb-13"
Edited by bernd, : inserted missing quote

This message is a reply to:
 Message 49 by Brad McFall, posted 10-14-2006 6:23 PM Brad McFall has replied

Replies to this message:
 Message 51 by Brad McFall, posted 10-17-2006 5:45 PM bernd has replied
 Message 52 by Brad McFall, posted 10-19-2006 8:06 PM bernd has replied

  
bernd
Member (Idle past 4011 days)
Posts: 95
From: Munich,Germany
Joined: 07-10-2005


Message 53 of 61 (357707)
10-20-2006 11:34 AM
Reply to: Message 51 by Brad McFall
10-17-2006 5:45 PM


Re: Re:falsification of non-historical interpretation
Hallo Brad,
Brad writes:
I would be contending that the "phylotypic stage" does not homogenously exist across the psm
In vertebrates the pharyngula stage is normaly described as phylotypic, so why do you associate phylotypic stage with presomitic mesoderm?
Brad writes:
I would revert to the Elder Darwinian, Erasmus instead who used the word PLAN(in the section quoted in Carter I displayed interthreadalia), which now would mean(for me at least) the split(left and right)-somite-formation, whether clocked or not, rather than the current version that the adjective("polytypic") derives as to a "body" plan which is Logically referable to Woodger's use on any dissection I should think( unless I am mistaken in this attribution)
In Erasmus Darwins text which may be downloaded from here the word “PLAN” doesn’t appear, he uses the term “structure” instead. But how can structure (or “PLAN”) mean “the split (left and right)-somite-formation”? Please back up this claim with a quote from E. Darwin.
Brad writes:
I do not see how short of prejudice one is out of the woods on bilaterally symmetric animals here, SINCE the somites themselves divide among left&right
Somites don’t divide themselves among left and right. The presomitic mesoderm is organized “as two rods of mesenchymal tissue, forming the presomitic mesoderm” (see The International Journal of Developmental Biology )
And what do you mean with “bilaterally symmetric animals”?
Brad writes:
I can see how a reductionist would try to read the parallel signaling paths as a means to remove this ambiguity but that does not seem to mean that it MUST be extended to the "tail bud
Which ambiguity? What “Must” be extended to the tail bud?
Brad writes:
There just is not as much information on the tail bud as there seems to be speculation about recruitment INTO the PSM.
Please have a look at figure 2 of the above linked article. As you can see tail somites are formed from psm.
Brad writes:
(..) but even if the VER looked like a limb bud, where is the evidence sans speculation and hope for future research information that, "it appears" that Hoxb-13b stops tail development when the creature has a bud but nothing tail wiser.
Humans have an embryonic tail. It is described here:
The development and disappearance of the human tail between stages 14 and 22 were studied using scanning and transmission electron microscopy, supravital staining and light microscopy. The tail is a prominent feature of the human embryo during stage 14 and is composed of paired somites, mesenchyme and extensions of the neural tube, notochord and gut. The tail grows with the embryo through early stage 17 when it extends more than a millimeter from the trunk. Overgrowth by the trunk at the base of the tail may account for the loss of part of its length during late stage 17 and stage 18. However, during stage 17 cells begin to die in all structures throughout the tail. Cell death continues in the succeeding stages reaching massive numbers by stages 18 and 19, and the tail becomes less and less prominent with developmental time. Most of the dead cells are phagocytosed. The debris-laden macrophages appear to migrate from the tail to the body. By late stage 21 or early stage 22 there is no free tail. We conclude that cell death has a major role in the destruction of tail structures and the concurrent loss of the human tail.
From Evidence of a role for cell death in the disappearance of the embryonic human tail.
Brad writes:
In other words how can be certain that if Hoxb-13 does not stop "overgrowth" (even though it appears to in tailed creatures) that it is not neutral or functions differently in a differently familiar situation where the development does not normally yield a "tail"?
How does this address the argument I formulated in messsage 76? Let’s assume for a moment, that Hoxb-13 functions differently in humans. But in mice it is expressed acccording to its chromosomal position in the tip of the tail and its function is most probable to stop tail development. All mammals have 4 hox clusters. We find the gene in mice and men at the same relative position of the hoxb cluster. With regard to homo sapiens this is easily explained by descent from a common ancestor with tail. How can this be somehow due to a structural constraint of development?
Besides, do you plan to comment on the second example I described in msg 76?
-Bernd
Edited by bernd, : clarification, spelling.

This message is a reply to:
 Message 51 by Brad McFall, posted 10-17-2006 5:45 PM Brad McFall has replied

Replies to this message:
 Message 54 by Brad McFall, posted 10-20-2006 3:53 PM bernd has replied

  
bernd
Member (Idle past 4011 days)
Posts: 95
From: Munich,Germany
Joined: 07-10-2005


Message 55 of 61 (359278)
10-27-2006 9:21 AM
Reply to: Message 54 by Brad McFall
10-20-2006 3:53 PM


Re: Re:falsification of non-historical interpretation
Hello Brad,
Brad writes:
There are some difficulties of language going on here. When I quoted Carter on Darwin I had in mind his anglo-expressions. I had hoped that by moving THROUGH Gould's lingo we would have exhausted our likely different linguisitic backgrounds. That does not seem to be the case given you response.
I was reading "stage" in an general evolutionary sense.
There are indeed “some difficulties of language going on here”. When you try to “read” stage in a general evolutionary sense then it is quite misleading to combine it with the word “phylotypic” - you’ll find the term “phylotypic stage” in the meaning “stage which typifies a phylum” probably in all text books about developmental biology. And when you claim that in E. Darwin's usage “PLAN” means “the split(left and right)-somite-formation” you should not be surprised when asked to back this up.
Another example of the same problem:
Brad writes:
Maybe I missed it, I am not trying to be obtuse, but I do not see how the existence of HOX cluster implies that the the terminal segement area must be non-scalar with respect to the magnitdue of a matrix metric that links(Correlates) the parts UP TO the END (of the creature). This would not apply to the internal structures logically however.
When you use concepts of linear algebra to model the expression of a hox cluster you should define your terms. So let’s have a look at the standard meaning of matrix and metric.
(In the following R denotes the set of the real numbers)
Each matrix can be expressed as a linear transformation. A transformation F: V->W between the vector spaces V and W (about R) is called linear, when the following conditions hold:
1. F(v+w) = F(v) + F(w)
2. F(λ*v) = λ*F(v)
With v, w ∈ V, λ ∈ R
A metric is defined as a function d: M × M -> R which meets the following conditions:
1. d(x, y) = 0 ⇔ x = y
2. d(x, y) = d(y,x)
3. d(x,z) ≤ d/x,y) + d(y,z)
With x,y,z ∈ M.
So when you talk about the “magnitude of a matrix metric” please define V, W and show that F is a linear transformation. Then define M and d and demonstrate that d meets the requirements for a metric. Done this you may tell me again what you tried to express with your sentence, specifically why you think that the “terminal segment must be non scalar”.
The following statements are probably due to another problem
Brad writes:
In frogs the macophages also destroy the tail but I do not see how the tail exisiting outside the psm in humans indicates a "lower" stage evolutionarily, necessarily. The tail is simply tissue at the end of the creature
Brad writes:
The psm marks the place between this edge and "interior" tissue
Brad writes:
The issue of how the EDGE gets divided from the zygote is a real one
I suspect these quotes reflect some misunderstandings about somitogenesis. Have a look at this:
During somitogenesis, at the body level, the paraxial mesoderm consists of the somitic region anteriorly and of the unsegmented PSM posteriorly. Because new somites are constantly added during somitogenesis, the ratio of segmented mesoderm over unsegmented mesoderm increases over time. While somite formation periodically removes unsegmented material from the PSM anteriorly, new mesodermal cells are added at the posterior extremity of the unsegmented tissue by the ongoing gastrulation process taking place in the primitive streak and later on in the tailbud. However, the net balance between the removal and addition of unsegmented tissue is not null and the length of the PSM varies during development. In mouse and chick embryos, PSM formation starts soon after the beginning of primitive streak regression. Its length progressively increases and peaks 1 day later, when it contains 12-14 presumptive somites in the chick embryo and around six somites in the mouse embryo (Packard and Meier, 1983 ; Tam and Beddington, 1986 ). The PSM length then gradually decreases until almost no unsegmented material remains, which coincides with the end of axis elongation
The “edge” - which I read as the tail bud - creates all tissue contributing to the lumbar, sacral and caudal regions. The tail bud itself is described as:
The tailbud is a small mass of highly packed undifferentiated cells, which undergo complex stereotyped movements similar to gastrulation before contributing to the definitive layers. These features suggest that the tailbud corresponds to a functional remnant of the blastopore or of the primitive streak (Cambray and Wilson, 2002 ; Catala et al., 1995 ; Gont et al., 1993 ; Kanki and Ho, 1997 ; Knezevic et al., 1998 ).
In other words, the “edge” gets divided from the “zygote” by producing new psm, while in the anterior part psm is constantly transformed into somites. When the last somites are formed - that are the somites of the tail - axis elongation stops.
For a detailed account compare the quoted article.
With regard to bilateral symmetry, you wrote:
Brad writes:
Yes tail somites ARE formed from the psm, as I read, but the "bud" exists as labeled beyond and BEFORE the somite pair appears as it appeared in the figure one, I think.
Am I seeing things wrong? Are not the two "rods" of tissue not each on a side off the a drawable midline??
I don’t dispute that the two rods of the psm are bilateral symmetric. But you seem to generalize this observation beyond the vertebrates. Obviously there are animals which are bilateral symmetric but don’t pass through an embryonic stage with somites. (If I didn’t understand your idea, please reformulate it.)
Brad writes:
If you can show me that hox molecular biology(relations of hox cluster physcial chemistry as promixate cause of all allomteric regularities) regulatory for the tail bud tissue itself then yes, I might be inclined to accept an historical interpreation for the functioning of the this "organ" or "tissue area" and would.
There are at least two genes which are regulatory for the tail bud:
Wnt-3a and Hoxb-13. Without Wnt-3a the tail bud does not form:
Amphibian studies have implicated Wnt signaling in the regulation of mesoderm formation, although direct evidence is lacking. We have characterized the expression of 12 mammalian Wnt-genes, identifying three that are expressed during gastrulation. Only one of these, Wnt- 3a, is expressed extensively in cells fated to give rise to embryonic mesoderm, at egg cylinder stages. A likely null allele of Wnt-3a was generated by gene targeting. All Wnt-3a-/Wnt-3a- embryos lack caudal somites, have a disrupted notochord, and fail to form a tailbud. Thus, Wnt-3a may regulate dorsal (somitic) mesoderm fate and is required, by late primitive steak stages, for generation of all new embryonic mesoderm. Wnt-3a is also expressed in the dorsal CNS. Mutant embryos show CNS dysmorphology and ectopic expression of a dorsal CNS marker. We suggest that dysmorphology is secondary to the mesodermal and axial defects and that dorsal patterning of the CNS may be regulated by inductive signals arising from surface ectoderm.
As already discussed Hoxb-13 probably regulates the apoptosis of the tail bud mesenchyme, stopping thereby tail and axis elongation.
Brad writes:
I take it your position is that if it was not for cell deaths which destroy the end/free embryonic tail no matter how much was overgrown by the trunk that, humans would posses in sexual maturity, a tail, as sometimes has been clinically recorded in a some hundreds at most individuals and because there are some deeply conserved issues of segementation between the vertebrates and invertebrates the end member of a serial division of the anatomy from head to end necesarily implies that the region between the free end the "trunk" must be explained as simply a matter of historical continuity from a heritable program saved over the generations?
My position is not topic of this thread. (But to give you an answer: no, that’s not my position, some of the reasons you may deduce from the above quotes about somitogenesis)
Brad writes:
Do notice that there is "gut" tissue in this end region. When thinking about tadpole tails I was able to think about ecological uses of the tail itself. Are we certain that there is not some gestational use for a free tail in fetuses? Could the few cases of adult human tails not be due rather than one associated with hoxology to one of overexpresion of genes possibly associated with a behavorial cause of embryonic free tails (assistance in untangling the umbilical?)?
Do you have you any evidence for the assumed function of the embryonic free tail? Besides that, doesn’t your idea imply that humans have a developmental pathway to develop a tail?
-Bernd

This message is a reply to:
 Message 54 by Brad McFall, posted 10-20-2006 3:53 PM Brad McFall has replied

Replies to this message:
 Message 59 by Brad McFall, posted 11-04-2006 5:59 PM bernd has replied

  
bernd
Member (Idle past 4011 days)
Posts: 95
From: Munich,Germany
Joined: 07-10-2005


Message 56 of 61 (359288)
10-27-2006 10:24 AM
Reply to: Message 52 by Brad McFall
10-19-2006 8:06 PM


Re: Response to falsification of non-historical interpretation
Hello Brad,
according to your source programmed cell death is regulated upstream by the same signals that control cell proliferation and differentiation. When we compare this with the end of somitogenesis in mice we find:
Somitogenesis normally ceases at ~E13.25 in the mouse,
when the TBM regresses by apoptosis. However, when ~E13
TBM cells are grafted into the primitive streak of the ~E8.5
embryo, they survive and make significant contributions to
paraxial mesoderm of the trunk (Tam and Tan, 1992). This
observation suggests that TBM survival and perhaps other
processes such as cell proliferation, fate determination and/or
differentiation are influenced by extrinsic signals.
The TBM (tail bud mesenchyme) is the source for all of the paraxial mesoderm in the caudal, lumbar and sacral region of the embryo and in consequence of all somites that form in these regions of the embryo.
Combine this with the observation that hoxb-13 in mice is expressed spatially in the tail tip and chronologically at the end of axis elongation, further that its function seems to be to stop tail growth. We can hopefully agree then that your idea about cell death simply providing “a space or rather a lack of cell area to morphogenetics rather than being a constructive constructor IN THE TAIL” is mistaken.
You seem to base your conclusion on your readings about frog tadpoles:
Brad writes:
I have read somewhat of the cell death in the tails of frog tadpoles and in reading that literature I have only been lead to think that cell death “destroys” a morphology in order to provide another (stronger back legs than front legs (to the gills)) (altruistically) and not that it regulates a part (tail bud) for the function of the tail itself(which seems to be necessary if the human tail is to be explained by the same history that gave up the frog’s lack).
A counter example to your claim that cell death “destroys a morphology in order to provide another”, is the role of apoptosis in vertebrate limb development. Developmental processes that include programmed cell deaths are for example:
” Elimination of transitory organs and tissues. Examples include phylogenetic vestiges (pronephros and mesonephros in higher vertebrates), anuran tails and gills and larval organs of holometabolous insects.
” Tissue remodeling. Vertebrate limb bud development (Fig. 11.42, Saunders, 1982; Fig. 1, Saunders, 1966) is an example. If PCD fails, in formation of the digits, digits remain joined by soft tissue. Compare, for example, the situation in the chick and duck hind limbs. If chick limb mesoderm is combined with duck ectoderm, PCD fails and the digits remain joined (Saunders, 1966). This observation implicates the ectoderm in providing the signal to trigger PCD. Another example is formation of heart loops during vertebrate development. Depletion of cells in spinal ganglia occurs during development of the chick embryo. As shown in Table 11.1 (Saunders, 1982), there is precise chronological and spatial control over this process. Interestingly, injections of nerve growth factor reduce the frequency of cell death in the spinal ganglia. This observation provides a link between growth control and PCD.
Brad writes:
This thought gives a purely structuralist explanation for cell death in the tail of a vertebrate and removes even the functionalist one.
Given that the tail of the tadpole is not replaced by “stronger legs” I see no explanation at all here.
-Bernd
Edited by bernd, : No reason given.

This message is a reply to:
 Message 52 by Brad McFall, posted 10-19-2006 8:06 PM Brad McFall has replied

Replies to this message:
 Message 58 by Brad McFall, posted 11-04-2006 5:35 PM bernd has not replied

  
bernd
Member (Idle past 4011 days)
Posts: 95
From: Munich,Germany
Joined: 07-10-2005


Message 60 of 61 (364938)
11-20-2006 3:15 PM
Reply to: Message 59 by Brad McFall
11-04-2006 5:59 PM


Re: other post
Hello Brad,
please excuse my late answer, but at the moment I am travelling with difficult access to internet and/or scientific literature. I am going to answer your posts in more detail in about 5 weeks.
Anyway it seems to me that the main difference relevant for this thread can be found here:
Brad writes:
In what I had thought was my last post in this series I suggested that BEHAVIORAL functionality may ADDITIONALLY format the embyronic functionality of this area and that instead of (as well as in addition to ) hoxology being the doxology of human "tails" rather there may be some deviant gene overexpression for this 'behavior' that extended beyond cell death protocols that would normally prevent the trait from appearing at birth.
The human embryonic tail reaches his maximum length at about the 5th week. In the following weeks its size decreases and at the end of the eight week it has nearly disappeared. Spontaneous movements of the embryo are not observed before the nineth or tenth week. In other words your behavioral explanation does not work for lack of behavior
Considering your remarks about a purely structural explanation of human tails, do you agree that up to now no supporting evidence was presented? And that on the other hand some observations in genetics seem to falsify your hypothesis?
-Bernd

This message is a reply to:
 Message 59 by Brad McFall, posted 11-04-2006 5:59 PM Brad McFall has replied

Replies to this message:
 Message 61 by Brad McFall, posted 11-20-2006 5:20 PM bernd has not replied

  
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