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Author Topic:   Why heirarchical taxonomy? Linnean system vs. Phylocode?
gnojek
Inactive Member


Message 1 of 33 (197296)
04-06-2005 4:30 PM


Howdy.
In another thread one poster made reference to another's usage of the word "man" or "mankind" and asked him why he used that phrasing. It seemed to the other poster that this was similar to using the term "kind" as YECs do when talking about the ark story. The poster then explained that he used the term "man" to describe anything in the genus "homo." So what he was saying (even though he didn't mean to) is that "homo" is a sort of Biblical "kind."
The classification of a species usually relies on the ability of an organism in a species to interbreed with other organisms of the same species. If two organisms can't interbreed then they are of a different species (you know, and they are of opposite sex and reproduce by sex, and are sexually viable). Even though some individuals of what we classify as species can interbreed, say members of the cats or dogs, and some others. Yet we put them into separate species for whatever reason.
In this regard, the Linnean heirarchical classification system seems to be largely arbitrary in many places, especially to a non-biologist such as myself. So that the term "genus" (maybe even other types of division) really could be supplanted by the term "kind".
My question is this: Why continue to bother with the heirarchical Linnean classification system when sometimes it seems that assignments to certain genuses and species seem arbitrary and use the same type subjective classification used to assign species to a certain "kind"?
What I mean is this: Say a paleontologist discovers an extinct species of bear. What is the difference between how he assigns this fossil to the genus "Ursus" and how a creationist would assign it to the kind "bear" (or some other name)?
Should we start using this Phylocode or some other non-heirarchical scheme?

Replies to this message:
 Message 3 by RAZD, posted 04-06-2005 9:01 PM gnojek has replied
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 Message 18 by mick, posted 04-08-2005 6:39 PM gnojek has replied

  
gnojek
Inactive Member


Message 10 of 33 (197495)
04-07-2005 3:24 PM
Reply to: Message 4 by Minnemooseus
04-07-2005 4:40 AM


Re: Phylocode in Discover magazine
Yeah, I have that issue.

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gnojek
Inactive Member


Message 11 of 33 (197499)
04-07-2005 3:54 PM
Reply to: Message 3 by RAZD
04-06-2005 9:01 PM


RAZD writes:
why? because it is the best way to differentiate species that we currently have.
What I meant is what does a biologist do in order to say "this goes in genus ursus" and how is that different from a biologist who might also be a creationist saying "I could put this in kind 'bear'" which to me is only a name game.
What features let us differentiate with the current system? What thought process goes into putting a specimen into a certain genus and is it as "arbitrary" as someone who also had a similar heirarchicy but just happened to have the category "kind" instead of "genus."
there are efforts to revise it from the old system to one based on genetics, but this is not raising too many {hackles\problems}, mostly because the genetic tree of life matches the old one pretty well (something like over 99% if I read another post correctly)
Well, from what I understand, in order to make it fit 99%, people had to invent new categories like sub-phylum, super-class, sub-species and things like this. It just seems really slapdash and not very adaptable to new knowledge. All these sub-divisions and such get really hairy and confusing.
when it comes to the bear, the paleontologist has a framework of species from which to work, complete with timelines for the different species that are known.
This is exactly what someone would do if they wanted to classify a specimen as a certain "kind." They have a framework of other species that we call bears based on the construction of the skeleton and other features. To me this seems kind of subjective. It may seem less subjective to "the trained eye."
the creationist likely says "it's a bear" and is usually satisfied with the answer, seemingly unconcerned that at some point "it's not a bear" becomes evident in the fossil record, along with "there are no bears there" before a certain date (as in no bear fossils appear in the geological record below the iridium layer that blanketed the earth only 65 million years ago).
I would imagine that a biologist will also say "it's a bear." Let's say hypothetically that the biologist is a creationist and he does all the other things that a biologist would do to classify the specimen as a bear, but instead of using the Linnean classification system, he just says that this specimen is of the bear "kind." How is that so different than putting him in the genus ursus? If the alternate classification scheme was also heirarchical then "kind" could come under "variety" and maybe "type." It would be the same thing but would stick to the literal Noah story.
Yeah, and from what I understand, the iridium layer is spotty around the world but when it is found it's always at the K-T boundary.
I'll choose a well defined system that has some problems, knowing what the problems are (and the work being done to resolve those problems), rather than an undefined system that not only cannot provide any information, but doesn't provide a framework for determining information, and say thanks.
Are you talking about Phylocode?
Well, the Linnean system doesn't provide any more information than a similar system under a creationist framework with the names changed.
It doesn't provide information on the linneage of the organism in question. The way it's set up, it's as if all organisms could be alive at the same time and it would still work the same.
this is said, knowing that at the other extreme, like the asian greenish warbler, we are all related to past species by a chain of small changes that wouldn't even be enough to warrent classification as a different variety, and thus if we only look at the changes within a brief period of time while delving further and further into the past we will find a continuous line of one "species" from human back to bacteria, as well as a similar line for virtually every other critter on earth. this obviously does not give us a framework to map out species, evolution and changes over time, so usually some point is reached where we draw an, albeit arbitrary, line that in essence says "we believe that the total changes between {that} species and {this} one are sufficient that should they happen to coexist we would classify them as different species" and thus break the line into a chain with links that are connected but where each link is distinct enough to distinguish and which only covers descrete segments of the lines of continuous life. this solves the messy {we are all one kind} question and sorts the data into useful bits.
Yeah, that's what phylocode would be better at doing than the Linnean system. The Linnean system (and this may be the whole point of this thread I think) was invented before evolutionary theory took off and is in essence a creationist system. Or, it would be identical to a system devised by a creationist that happened to have the classification "kind."

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 Message 3 by RAZD, posted 04-06-2005 9:01 PM RAZD has replied

Replies to this message:
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gnojek
Inactive Member


Message 12 of 33 (197500)
04-07-2005 3:59 PM
Reply to: Message 5 by Andya Primanda
04-07-2005 8:34 AM


Re: Phylocode
Exactly!
The Linnean system goes to hell in some circumstances.
Sometimes there are just too many differences to just cubby a classification into a specific ranking.
From what I read in that Discover article ( I had heard of Phylocode about a year before, but anyway... ) the people who like Phylocode are the ones working in fields where the old system is most problematic.
The ones who are against it are the ones working in fields where the Linnean system works.
I think it was the insect people versus the mammal people.

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gnojek
Inactive Member


Message 13 of 33 (197502)
04-07-2005 4:08 PM
Reply to: Message 7 by Chiroptera
04-07-2005 9:57 AM


Re: It served its purpose
Chiroptera writes:
Once common descent was proposed, this classification became very important evidence for this theory. The system retained its importance over the years, as new living species that were discovered, and, more importantly, the multitude of fossil species also fit very nicely into the system, providing further evidence for common descent.
I know above I said the Linnean system was identical to a creationist system, but I did forget that the heirarchical scheme of it became a sort of evidence for common descent. But I still think that the Linnean system would work whether there was common descent or not. I may be totally wrong, but the way it seems, the system could work if every organism ever alive was alive today (crap, but so would phyolocode )
Still, one can see why some people would prefer the Linnean system. One really wants to say the lungfish, for example, are obviously fish, and, despite a phylogenic relationship to tetrapods, it does almost seem perverse to group lungfish with mammals as a group that is very separate from the teleosts. Stephen J. Gould even remarks on this in an essay (although I forgot which one).
Yeah, this is the kind of "arbitrary" subjectivity I was talking about. New knowledge comes along and it becomes really hard to change the classification of an organism. It's like someone looked at it, evev fully characterized it in every way, measured everything and then some, but the final shelving into a cubby with a name on it is pretty damned subjective it seems.
All classifying systems are arbitrary.
Ah! Thanks for that! I was hoping someone would give me some validation for my concerns.

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gnojek
Inactive Member


Message 15 of 33 (197519)
04-07-2005 4:56 PM
Reply to: Message 14 by Loudmouth
04-07-2005 4:14 PM


I think it's finally clearing up for me.
I keep thinking of the way a creationist might think in my biased evolutionary way of thinking. It never occured to me that a creationist would not want to make a heirarchy because that would then suggest to him a common descent.
Now I wonder, since most creationists must have encountered at least the classical Linnean system in school, do they reject it?
I guess there is no real need to reject it since it doesn't necessitate common descent, it only implies it. One could still use the Linnean scheme and just say that it's based on physical similarity (as I guess it was done before evolutionary theory was applied).
BTW, I haven't heard from a creationist on this. I was hoping they could clear up my misinterpretations of how an organism might be placed into a certain kind.

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gnojek
Inactive Member


Message 20 of 33 (198121)
04-10-2005 5:53 PM
Reply to: Message 18 by mick
04-08-2005 6:39 PM


mick writes:
Can interbreed and produce viable offspring? Quite rare, in fact (though not unheard of)
[added in edit, because I realised I didn't actually make a point in my post]:
which hybridizations do you have in mind? I mean hybridizations that challenge the biological species concept.
I usually start thinking about cat hydrids, which are usually fertile.
In the wild they never really interbreed, because of social order, but they are capable of interbreeding with other species in the cat family. I guess the only reason they are separate species is because they wouldn't normally mate in the wild (that and the fact that humans don't breed them very often is the reason it's rare).
Then, I don't know if cattle and bison are put into separate species, or if breeds of domestic cattle are put into separate species either.
And something like african wild dogs are a different species from domestic dogs as are wolves ,but I think all can interbreed and produce fertile offspring.
Then there's the other direction. I'm also not sure if they've given lab rabbits a new species because after being bred in captivity all these generations they can't interbreed with wild rabbits. I guess that's not the same and only an example of observed speciation.
Anyway, this just reinforces my belief that these classification systems, at least at the species level is kind of hard to nail down objectively. It's difficult to assign certain types of animals (don't know the other kindoms) to a specific species and another to a different species. The basis for the assignment isn't entirely concrete.

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gnojek
Inactive Member


Message 21 of 33 (198123)
04-10-2005 6:02 PM
Reply to: Message 19 by mick
04-08-2005 7:21 PM


mick writes:
razd is right.
in fact "kind" is not even a system. it's one of the most stupid generalized terms I can imagine to describe the diversity of life.
Maybe people are missing the point of the thing.
I guess I wasn't clear in that I was hypothesizing a system equal in scope with the Linnean system or Phylocode, but it has as a division of classification "kind" instead of something like a genus or maybe even an order. Perhaps it would not be exaclty equivalent to either but required some other criteria to fill it. It would be in a heirarchy just the same as either Linneus or Phylocode and would describe ALL life. It would just have the term "kind" in there, so as to stick to the Bible, and thus making the Bible more accurate in some way (as long as there was some sort of accelerated evolution that took place right after the flood and does not happen today).
I think it's worth taking a moment to praise taxonomists. There would be no biology whatsoever without them. It is through their systematic, thorough, and objective lens that biology has taken shape over the last century or so.
mick
Praise be to them. All glory and honor are theirs, forever and ever.
But really, there has to be a limit to the objectivity, especially at the species level in lots of cases.

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 Message 19 by mick, posted 04-08-2005 7:21 PM mick has replied

Replies to this message:
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gnojek
Inactive Member


Message 24 of 33 (199007)
04-13-2005 5:12 PM
Reply to: Message 22 by mick
04-12-2005 1:02 PM


What do you mean they don't exist?
Do you mean in real life, or in my hypothetical creationist classification system?
I guess they don't have to exist.
There would be other categories with other names.
"Kind" would be one of those categories.
The point is not to add things or subtract things from existing systems. It's to divise a system that has a category "kind" that is equal in scope to existing systems.

This message is a reply to:
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gnojek
Inactive Member


Message 25 of 33 (199010)
04-13-2005 5:16 PM
Reply to: Message 23 by Brad McFall
04-12-2005 5:27 PM


That is an interesting thought. It never occured to me how we would classify extraterrestrial life once we do actualy find some. Do we stick it in with the earthly critters if they look similar, or do they get their own kingdom etc? Hmmmmmmmmmmmm................

This message is a reply to:
 Message 23 by Brad McFall, posted 04-12-2005 5:27 PM Brad McFall has replied

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