Gene isolation is gene isolation, no matter the reason.
This raises the (to me at least) slightly odd possibility that what had been two species could suddenly become one. If you have two groups that can breed together in the wild but don't only because of some physical barrier they are two species by this definition. If however the physical barrier is removed these two groups/species will be able to mix and breed and so become one species.
Is this just so unlikely/insignificant that it isn't worth bothering about ?
Confused ? You will be...