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Author Topic:   The "common creator" myth
Coragyps
Member (Idle past 760 days)
Posts: 5553
From: Snyder, Texas, USA
Joined: 11-12-2002


Message 136 of 147 (135391)
08-19-2004 6:51 PM
Reply to: Message 132 by General Nazort
08-19-2004 6:14 PM


Re: Waaa
Show me proof of this?
Ekland, E.H. and Bartel, D.P., Nature, 382, 373-376 (1996), or Google up Jack Szostak's home page and wander around in his list of references. There's lots of pdfs of otherwise pay-per-view papers there.

This message is a reply to:
 Message 132 by General Nazort, posted 08-19-2004 6:14 PM General Nazort has replied

Replies to this message:
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pink sasquatch
Member (Idle past 6048 days)
Posts: 1567
Joined: 06-10-2004


Message 137 of 147 (135404)
08-19-2004 7:24 PM
Reply to: Message 132 by General Nazort
08-19-2004 6:14 PM


Re: Waaa
Show me proof of this?
There's no such thing as proof in science, but here's some evidence:
In addition to the classic paper mentioned above, here's a more recent paper describing an RNA capable of synthesizing nucleotides (the building blocks of the RNA strand), and another paper describing an RNA that acts as a polymerase, efficiently and accurately copying another RNA strand.
No protein or DNA needed.
Ok, then the division of species is "kinds" as seen in the Bible. Does that work?
If brown bears and black bears are the same kind, then no.

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General Nazort
Inactive Member


Message 138 of 147 (135519)
08-20-2004 1:12 AM
Reply to: Message 136 by Coragyps
08-19-2004 6:51 PM


Re: Waaa
Ekland, E.H. and Bartel, D.P., Nature, 382, 373-376 (1996)
This paper seems to be about "RNA-catalysed RNA polymerization using nucleoside triphosphates," not RNA being created in a laboratory.

Pray for mercy from... PUSS! In boots. (Don't forget the French accent!)

This message is a reply to:
 Message 136 by Coragyps, posted 08-19-2004 6:51 PM Coragyps has not replied

Replies to this message:
 Message 139 by pink sasquatch, posted 08-20-2004 1:24 AM General Nazort has replied

  
pink sasquatch
Member (Idle past 6048 days)
Posts: 1567
Joined: 06-10-2004


Message 139 of 147 (135524)
08-20-2004 1:24 AM
Reply to: Message 138 by General Nazort
08-20-2004 1:12 AM


Re: Waaa
What exactly do you envision by "creation of RNA in the laboratory"?
Simply "making RNA" is very routine (actually quite trivial) in the lab - the trick is to get RNA to carry out the reactions to make more RNA, which is where the "RNA-catalyzed RNA polymerization" comes in - the catalytic RNA is catalyzing the production of other RNA.

This message is a reply to:
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 Message 140 by General Nazort, posted 08-20-2004 1:33 AM pink sasquatch has replied

  
General Nazort
Inactive Member


Message 140 of 147 (135525)
08-20-2004 1:33 AM
Reply to: Message 139 by pink sasquatch
08-20-2004 1:24 AM


Re: Waaa
Simply "making RNA" is very routine (actually quite trivial) in the lab - the trick is to get RNA to carry out the reactions to make more RNA, which is where the "RNA-catalyzed RNA polymerization" comes in - the catalytic RNA is catalyzing the production of other RNA.
Nonono I mean making RNA from some kind of prebiotic soup, making RNA from the basic building blocks of life. To make this RNA in the lab you need to have existing RNA. Has RNA been made in the lab that was not made from already existing RNA? Because that is how the FIRST RNA would have to come into existence. And I still would like an estimate on the probablity of this.

Pray for mercy from... PUSS! In boots. (Don't forget the French accent!)

This message is a reply to:
 Message 139 by pink sasquatch, posted 08-20-2004 1:24 AM pink sasquatch has replied

Replies to this message:
 Message 141 by pink sasquatch, posted 08-20-2004 2:21 AM General Nazort has replied
 Message 142 by Wounded King, posted 08-20-2004 7:19 AM General Nazort has replied

  
pink sasquatch
Member (Idle past 6048 days)
Posts: 1567
Joined: 06-10-2004


Message 141 of 147 (135534)
08-20-2004 2:21 AM
Reply to: Message 140 by General Nazort
08-20-2004 1:33 AM


Re: Waaa
Has RNA been made in the lab that was not made from already existing RNA?
Yes. Both RNA and DNA are synthesized in the lab routinely from purely chemical reactions with no template.
In fact, it is so routine that there are many companies that will be happy to make it for you - give them a credit card number and a sequence, and they'll send you a tube full of RNA or DNA with that sequence. Here's one such company - this site includes their pricing (RNA is more expensive than DNA) and at the bottom of the page there is a bit about the chemistry used.
However, there has also been much work done regarding how surface chemistry may have occurred in the 'soup'. Here is one, recent, interesting journal article that provides some background on how RNA can form by chemical reactions, and how UV light can act as a selective force to drive RNA evolution. It may not be the best reference but the full text was available... Following the references at the end of the paper may be useful to you.
And I still would like an estimate on the probablity of this.
Sorry, I can't give you one, I don't know that anyone could - simply not enough is known to put things into numbers.
I'm not sure why you are so hung up on probabilities, though. If I said a one-in-a-billion chance, would you find that believable? What about one-in-a-trillion? The number of chemical conditions and reactions that have taken place in the long history of the Earth is so huge that it could easily "handle" enormously low probabilities.
Also, when discussing the formation of a replicating molecule - it only has to happen once, since the rest of the molecules are a downstream result of the initial formation, and not independent.

This message is a reply to:
 Message 140 by General Nazort, posted 08-20-2004 1:33 AM General Nazort has replied

Replies to this message:
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Wounded King
Member
Posts: 4149
From: Cincinnati, Ohio, USA
Joined: 04-09-2003


Message 142 of 147 (135602)
08-20-2004 7:19 AM
Reply to: Message 140 by General Nazort
08-20-2004 1:33 AM


Re: Waaa
This is totally off topic but I have to point out, Antonio Banderas (who voiced Puss in boots) is not french, the accent is spanish.
TTFN,
WK
This message has been edited by Wounded King, 08-20-2004 06:19 AM

This message is a reply to:
 Message 140 by General Nazort, posted 08-20-2004 1:33 AM General Nazort has replied

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General Nazort
Inactive Member


Message 143 of 147 (135633)
08-20-2004 11:12 AM
Reply to: Message 142 by Wounded King
08-20-2004 7:19 AM


Re: Waaa
This is totally off topic but I have to point out, Antonio Banderas (who voiced Puss in boots) is not french, the accent is spanish.
thanks, corrected
This message has been edited by General Nazort, 08-20-2004 10:13 AM

Pray for mercy from... PUSS! In boots. (Don't forget the Spanish accent!)

This message is a reply to:
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General Nazort
Inactive Member


Message 144 of 147 (142326)
09-14-2004 11:34 AM
Reply to: Message 141 by pink sasquatch
08-20-2004 2:21 AM


Re: Waaa
Yes. Both RNA and DNA are synthesized in the lab routinely from purely chemical reactions with no template.
I'm sot quite sure, but it seems that RNA synthesis still requires the existence of previous molecules.
from Page not available - NCBI Bookshelf
RNA synthesis, or transcription, is the process of transcribing DNA nucleotide sequence information into RNA sequence information. RNA synthesis is catalyzed by a large enzyme called RNA polymerase.
So they can synthesize RNA but they need a catalyst to get it started?

Pray for mercy from... PUSS! In boots. (Don't forget the Spanish accent!)

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 Message 141 by pink sasquatch, posted 08-20-2004 2:21 AM pink sasquatch has not replied

Replies to this message:
 Message 145 by Rei, posted 09-14-2004 1:40 PM General Nazort has not replied
 Message 146 by Loudmouth, posted 09-14-2004 2:00 PM General Nazort has replied

  
Rei
Member (Idle past 7038 days)
Posts: 1546
From: Iowa City, IA
Joined: 09-03-2003


Message 145 of 147 (142348)
09-14-2004 1:40 PM
Reply to: Message 144 by General Nazort
09-14-2004 11:34 AM


Re: Waaa
Where does it say that we can't produce an RNA polymerase? RNA polymerases are certainly simpler molecules, in general, than the RNA that they help clone, so I would be surprised if we couldn't.

"Illuminant light,
illuminate me."

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Loudmouth
Inactive Member


Message 146 of 147 (142354)
09-14-2004 2:00 PM
Reply to: Message 144 by General Nazort
09-14-2004 11:34 AM


Re: Waaa
quote:
I'm sot quite sure, but it seems that RNA synthesis still requires the existence of previous molecules.
from Page not available - NCBI Bookshelf
What that site describes is how RNA synthesis occurs in cells NOW, not what the original RNA synthesis pathway was like. Abiogenesis is looking for a much simpler system that can be catalyzed by RNA itself. The pathway you linked to is the result of millions of years of evolution.
quote:
So they can synthesize RNA but they need a catalyst to get it started?
In the lab, synthetic RNA synthesis (as I understand it) does not require a catalyst. To reproducibly create a specific RNA sequence the nucleotides are added sequentially with steps in between to modify the hydroxyl groups on the ribose sugar moeties. For a random sequence this type of control is not needed, but a catalyst may be necessary for joining the nucleotides through a pyrophosphate linkage. Boiled down, RNA polymerization is simple but replicating a specific sequence is a little harder. However, once you have a random sequence that is capable of reliably replicating new sequence then that hurdle is passed.

This message is a reply to:
 Message 144 by General Nazort, posted 09-14-2004 11:34 AM General Nazort has replied

Replies to this message:
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General Nazort
Inactive Member


Message 147 of 147 (142585)
09-15-2004 5:31 PM
Reply to: Message 146 by Loudmouth
09-14-2004 2:00 PM


Re: Waaa
In the lab, synthetic RNA synthesis (as I understand it) does not require a catalyst. To reproducibly create a specific RNA sequence the nucleotides are added sequentially with steps in between to modify the hydroxyl groups on the ribose sugar moeties. For a random sequence this type of control is not needed, but a catalyst may be necessary for joining the nucleotides through a pyrophosphate linkage. Boiled down, RNA polymerization is simple but replicating a specific sequence is a little harder. However, once you have a random sequence that is capable of reliably replicating new sequence then that hurdle is passed.
Okay, I think I kind of understand. Where do they get the nucleotides?

Pray for mercy from... PUSS! In boots. (Don't forget the Spanish accent!)

This message is a reply to:
 Message 146 by Loudmouth, posted 09-14-2004 2:00 PM Loudmouth has not replied

  
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