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Author Topic:   Evolution falsifies God/s?
herebedragons
Member (Idle past 878 days)
Posts: 1517
From: Michigan
Joined: 11-22-2009


Message 211 of 253 (728341)
05-27-2014 9:09 AM
Reply to: Message 186 by RAZD
05-26-2014 8:15 AM


Re: beating a dead horse once more around the bushes
Hey RAZD
Your overall challenge to faceman is good, I just wanted to point out a couple things ...
Would you AGREE or DISAGREE that a duplication mutation would be neutral?
There really isn't a YES or NO answer to this question. Duplications can have wide ranging effects from completely neutral to a speciation event. For example polyploidy could be considered whole genome duplication and can often lead to speciation. Duplication of a non-coding sequence would be neutral. Duplications of other types of sequences would vary greatly in their effects.
Perhaps, "... a duplication mutation COULD be neutral?" would be easier to answer.
Would you AGREE or DISAGREE that natural selection would tend to remove them if they are actually deleterious?
One of the problems in discussions like these is the YEC like to use the human genome as an example of "genetic load," "genetic deterioration," "genetic meltdown" or whatever the term of the day is. Humans are the worst example to use to discuss this because we have found so many way to get around deleterious mutations. For example, if I had been born 300 years ago, I would probably not lived to reproductive age. My eyesight is so bad i would certainly fell off a cliff or been the first to die in a battle, etc. But today because of corrective lenses, I have been able to pass on my genes just fine - although my daughter has eyesight almost as poor as mine.
SO if we are talking about humans ... I DISAGREE that natural selection would tend to remove them, but for all other species, I would AGREE (the key words though being "tend to remove")
However, it doesn't appear faceman wanted to answer your questions, so my pointing this out was probably pointless, as I doubt you actually needed to be corrected on these points.
HBD

Whoever calls me ignorant shares my own opinion. Sorrowfully and tacitly I recognize my ignorance, when I consider how much I lack of what my mind in its craving for knowledge is sighing for... I console myself with the consideration that this belongs to our common nature. - Francesco Petrarca
"Nothing is easier than to persuade people who want to be persuaded and already believe." - another Petrarca gem.
Ignorance is a most formidable opponent rivaled only by arrogance; but when the two join forces, one is all but invincible.

This message is a reply to:
 Message 186 by RAZD, posted 05-26-2014 8:15 AM RAZD has replied

Replies to this message:
 Message 216 by RAZD, posted 05-27-2014 11:20 AM herebedragons has not replied

  
herebedragons
Member (Idle past 878 days)
Posts: 1517
From: Michigan
Joined: 11-22-2009


Message 212 of 253 (728342)
05-27-2014 9:12 AM
Reply to: Message 198 by faceman
05-27-2014 1:21 AM


Re: once more around the bushes
Hi faceman.
Here it is in action:
The Achilles' heel of biological complexity
Curious, what do you see as the "take home message" from this article you referenced?
HBD

Whoever calls me ignorant shares my own opinion. Sorrowfully and tacitly I recognize my ignorance, when I consider how much I lack of what my mind in its craving for knowledge is sighing for... I console myself with the consideration that this belongs to our common nature. - Francesco Petrarca
"Nothing is easier than to persuade people who want to be persuaded and already believe." - another Petrarca gem.
Ignorance is a most formidable opponent rivaled only by arrogance; but when the two join forces, one is all but invincible.

This message is a reply to:
 Message 198 by faceman, posted 05-27-2014 1:21 AM faceman has replied

Replies to this message:
 Message 224 by faceman, posted 05-31-2014 1:51 AM herebedragons has not replied

  
Straggler
Member
Posts: 10333
From: London England
Joined: 09-30-2006


(2)
Message 213 of 253 (728348)
05-27-2014 10:14 AM
Reply to: Message 201 by faceman
05-27-2014 1:53 AM


Hox
Face writes:
We observe variation, not new body plans having been created.
Well..... You say that. But have you ever heard of Hox genes?
Here is a simple explanation
Link

This message is a reply to:
 Message 201 by faceman, posted 05-27-2014 1:53 AM faceman has replied

Replies to this message:
 Message 225 by faceman, posted 05-31-2014 2:04 AM Straggler has replied

  
herebedragons
Member (Idle past 878 days)
Posts: 1517
From: Michigan
Joined: 11-22-2009


(3)
Message 214 of 253 (728350)
05-27-2014 10:31 AM
Reply to: Message 207 by faceman
05-27-2014 2:20 AM


Re: Why would a YEC argue against YEC?
Why not use bacteria as your example. I think they burn through a generation every 30 min or so, don't they? It's an apples to oranges comparison though. The far more simpler genome of the fruit fly (or of bacteria) means less can go wrong plus they have an enormous population size anyways (unlike us).
Not really. Because of their rapid generation times, bacteria and to a lesser extent, fruit flies are under significant constraints to keep their genome small and compact. This provides for efficient, rapid duplication and conserves resources. If you look at a bacterial gene map, you would see that there is very little untranslated regions. The following table is a very generalized overview:
E. coli Fruit Fly Human
# genes 4,500 15,700 20,000
# base pairs 4.6 M 139.5 M 3,235 M
# chromosomes 1 4 23
Gene density is not a straight forward calculation, however. For E. coli, the average distance between genes is about 120 base pairs. Humans can have 10s of thousands of base pairs between genes. Also, about 25% of the human genome is introns, which are spliced out and recycled (some introns do have functions so ~20% are discarded). E. coli does not have introns.
The point is that the human genome has huge areas where mutations could occur that would have no effect on fitness. Mutations would be much more likely to affect fitness in bacteria. So their "simpler genomes" means more can go wrong.
If something does go wrong, then natural selection should spot it right away and remove it. The near neutral theory, however, allows for slightly deleterious mutations to squeak by, unnoticed by natural selection.
You seem to imagine natural selection as an active agent that constantly scans the genome for defects so it can remove them. Not so. If a fruit fly was born with one leg that was 25% shorter than the others, that would probably be a slightly deleterious mutation, right? But... would that stop him from finding a mate and producing offspring? Probably not. So he mates and the female lays 1,000 eggs, roughly half of which have this slightly deleterious mutation. This would be how slightly deleterious mutations "squeak by, unnoticed by natural selection." The question should be "Will the mutation affect the organism's ability to produce offspring?" That is how fitness is determined by natural selection.
I like uphill battles.
Do you like uphill battles just for the sake of uphill battles? I hope you are the kind of person who is willing to learn a few things rather than just wanting to rage against something you don't like or don't understand.
HBD

Whoever calls me ignorant shares my own opinion. Sorrowfully and tacitly I recognize my ignorance, when I consider how much I lack of what my mind in its craving for knowledge is sighing for... I console myself with the consideration that this belongs to our common nature. - Francesco Petrarca
"Nothing is easier than to persuade people who want to be persuaded and already believe." - another Petrarca gem.
Ignorance is a most formidable opponent rivaled only by arrogance; but when the two join forces, one is all but invincible.

This message is a reply to:
 Message 207 by faceman, posted 05-27-2014 2:20 AM faceman has not replied

  
Tanypteryx
Member
Posts: 4411
From: Oregon, USA
Joined: 08-27-2006
Member Rating: 5.4


(1)
Message 215 of 253 (728351)
05-27-2014 10:35 AM
Reply to: Message 197 by faceman
05-27-2014 1:05 AM


Re: once more around the bushes
Hi faceman.
Thanks for the advice and information. I don't think her nearly neutral theory says what you think it does, or that it is the cause of your genetic extinction.
_________________________________________________
You still haven't answered my question. Do you have any examples of genetic extinction that resulted from genetic load?
No not yet, but keep your eye on the atheist from WI, he seems to be nearing meltdown real soon.
You are new around here, so I will just say "don't hold your breath."

What if Eleanor Roosevelt had wings? -- Monty Python
One important characteristic of a theory is that is has survived repeated attempts to falsify it. Contrary to your understanding, all available evidence confirms it. --Subbie
If evolution is shown to be false, it will be at the hands of things that are true, not made up. --percy

This message is a reply to:
 Message 197 by faceman, posted 05-27-2014 1:05 AM faceman has not replied

  
RAZD
Member (Idle past 1426 days)
Posts: 20714
From: the other end of the sidewalk
Joined: 03-14-2004


Message 216 of 253 (728356)
05-27-2014 11:20 AM
Reply to: Message 211 by herebedragons
05-27-2014 9:09 AM


Re: beating a dead horse once more around the bushes
Perhaps, "... a duplication mutation COULD be neutral?" would be easier to answer.
Okay I can go with that. As we see from Straggler and the Hox gene article such duplications can also end up beneficial (just not immediately, which is the point I was moving towards).
SO if we are talking about humans ... I DISAGREE that natural selection would tend to remove them, but for all other species, I would AGREE (the key words though being "tend to remove")
Yes, we have affected (changed) our ecology so that they are neutral rather than deleterious, even though they would have been deleterious 100 years ago.

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This message is a reply to:
 Message 211 by herebedragons, posted 05-27-2014 9:09 AM herebedragons has not replied

  
Dr Adequate
Member (Idle past 305 days)
Posts: 16113
Joined: 07-20-2006


Message 217 of 253 (728360)
05-27-2014 11:35 AM
Reply to: Message 207 by faceman
05-27-2014 2:20 AM


Re: Why would a YEC argue against YEC?
The far more simpler genome of the fruit fly (or of bacteria) means less can go wrong ...
I don't follow your reasoning here. A bicycle is simpler and has fewer parts than a 747; this doesn't mean that bollixing one part of a bicycle is less likely to make it useless than if you did the same to a 747.

This message is a reply to:
 Message 207 by faceman, posted 05-27-2014 2:20 AM faceman has replied

Replies to this message:
 Message 226 by faceman, posted 05-31-2014 2:22 AM Dr Adequate has replied

  
Stile
Member
Posts: 4295
From: Ontario, Canada
Joined: 12-02-2004


(1)
Message 218 of 253 (728362)
05-27-2014 11:35 AM
Reply to: Message 191 by faceman
05-27-2014 12:20 AM


Foundational Confusion
faceman writes:
ringo writes:
How is different information not "new" information?
But is it beneficial? Can it ultimately turn a fish into us?
I'm guessing here, but your response to ringo seems to imply a deep misunderstanding of the word "beneficial."
In biology, when discussing mutations, "beneficial" does not mean "more like humans."
Beneficial does not even necessarily mean:
-more intelligent
-more dexterity
-stronger
-camouflaged
-bigger
-better eye-sight
-new senses
None of these are what "beneficial" means.
They can be beneficial.
And they can also not be beneficial.
When discussing mutations in biology, "beneficial" only has one meaning: helps the organism survive to the point of reproducing.
That's it.
Sometimes that means getting stronger or bigger or more intelligent.
Sometimes that means getting weaker or smaller or dumber.
It can sometimes be extremely counter-intuitive (like getting dumber being beneficial).
Intelligence can sometimes lead to taking time to make decisions. If you take too much time, and get eaten... the intelligence is not beneficial. In such a circumstance, getting dumber is beneficial.
If you're going to attempt discussions about biological mutations, it's best to understand what the terms actually mean in biology and not what they can mean when talking to your friends about your day.

This message is a reply to:
 Message 191 by faceman, posted 05-27-2014 12:20 AM faceman has not replied

  
ringo
Member (Idle past 433 days)
Posts: 20940
From: frozen wasteland
Joined: 03-23-2005


(1)
Message 219 of 253 (728365)
05-27-2014 11:56 AM
Reply to: Message 191 by faceman
05-27-2014 12:20 AM


Re: still doesn't answer the question
faceman writes:
ringo writes:
How is different information not "new" information?
But is it beneficial?
The question I asked was, "How is different information not 'new' information?" How does a DNA molecule "know" whether a mutation produced "new" information?
Of course, from the molecule's point of view, there is no "beneficial". The molecule just does what it does. It produces an organism which may or may not reproduce before it dies. If it does reproduce successfully, then the mutation was "beneficial".
There is no way of determining what was beneficial until after the fact. Did we take the "best" route from A to B? Well, we got here, didn't we? So we took a working route. There's no way to rewind history and rerun it to see if another route was "more beneficial".
ringo writes:
Can it ultimately turn a fish into us? If so, how? Insert mutations?
What's the difference between fish DNA and human DNA? Anything that mutations can't change? (Hint: mutation = change, so "Anything changes can't change?")

This message is a reply to:
 Message 191 by faceman, posted 05-27-2014 12:20 AM faceman has not replied

  
herebedragons
Member (Idle past 878 days)
Posts: 1517
From: Michigan
Joined: 11-22-2009


(1)
Message 220 of 253 (728367)
05-27-2014 12:04 PM
Reply to: Message 174 by faceman
05-24-2014 1:22 PM


Re: once more around the bushes
By "in the way", I meant it will no longer be "available" to the organism as a source of useful information, like it was before it mutated into a neutral mutation. In that way, it serves no purpose and eventually could be thought of as deleterious because it will no longer help the organism stave off genetic extinction.
Here is a research article that may help to clarify RAZD's points about duplication. Read it through and see if it clears up the misconception about useful information no longer being available.
HBD

Whoever calls me ignorant shares my own opinion. Sorrowfully and tacitly I recognize my ignorance, when I consider how much I lack of what my mind in its craving for knowledge is sighing for... I console myself with the consideration that this belongs to our common nature. - Francesco Petrarca
"Nothing is easier than to persuade people who want to be persuaded and already believe." - another Petrarca gem.
Ignorance is a most formidable opponent rivaled only by arrogance; but when the two join forces, one is all but invincible.

This message is a reply to:
 Message 174 by faceman, posted 05-24-2014 1:22 PM faceman has not replied

  
Dr Adequate
Member (Idle past 305 days)
Posts: 16113
Joined: 07-20-2006


Message 221 of 253 (728412)
05-28-2014 12:23 PM
Reply to: Message 201 by faceman
05-27-2014 1:53 AM


The Value Of Direct Observation
We observe variation, not new body plans having been created.
You are missing the point.
Let me give you an analogy. Suppose we spend a week observing a man walking in Ohio. During the course of our observations, he's walking due East, making an average of ten miles a day. Now, this does not prove, and no-one claims that it proves, that he's walked all the way from the West Coast. To ascertain that, we'd need further data about the earlier stage of his journey.
What it does prove, conclusively, is that there is no mysterious force that ineluctably and inevitably drags everyone due West.

This message is a reply to:
 Message 201 by faceman, posted 05-27-2014 1:53 AM faceman has replied

Replies to this message:
 Message 227 by faceman, posted 05-31-2014 2:34 AM Dr Adequate has replied

  
faceman
Member (Idle past 3406 days)
Posts: 149
From: MN, USA
Joined: 04-25-2014


(1)
Message 222 of 253 (728603)
05-31-2014 1:09 AM
Reply to: Message 210 by Theodoric
05-27-2014 8:14 AM


Re: a small step maybe
Are you talking to me? You're not cussing, so it's hard for me to tell.

This message is a reply to:
 Message 210 by Theodoric, posted 05-27-2014 8:14 AM Theodoric has not replied

  
faceman
Member (Idle past 3406 days)
Posts: 149
From: MN, USA
Joined: 04-25-2014


Message 223 of 253 (728606)
05-31-2014 1:46 AM
Reply to: Message 209 by RAZD
05-27-2014 6:04 AM


Re: more absurdities
The point I'm sure you know I'm getting at, but are pretending not to hear, is that developing the ability to create an eye or an ear would be an example of gaining new information (compared to where life began - according you folks anyways).
Further I would agree that no organism would have the specific sequences to form any traits that are not in the population for that species.
If no organism can have specific sequences that its species doesn't already own, then how did that species acquire those sequences in the first place? You're contradicting yourself.
The actual process would take many mutations, many selections in favorable ecologies, many generations to achieve relatively minor modifications. Many steps, taken one step at a time.
Would 40,000 generations be enough time to create new and useful modifications? It was tried with Escherichia coli, but the result sounds a lot like genetic entropy to me.
Or the evolution of tetrapodal intermediate Tiktaalik from finned fish.
Don't forget one of the greatest examples of all: Coelacanth.

This message is a reply to:
 Message 209 by RAZD, posted 05-27-2014 6:04 AM RAZD has replied

Replies to this message:
 Message 232 by RAZD, posted 05-31-2014 7:19 AM faceman has not replied
 Message 235 by bluegenes, posted 05-31-2014 2:16 PM faceman has not replied
 Message 236 by Dr Adequate, posted 05-31-2014 2:35 PM faceman has not replied
 Message 237 by AZPaul3, posted 05-31-2014 6:05 PM faceman has not replied

  
faceman
Member (Idle past 3406 days)
Posts: 149
From: MN, USA
Joined: 04-25-2014


Message 224 of 253 (728607)
05-31-2014 1:51 AM
Reply to: Message 212 by herebedragons
05-27-2014 9:12 AM


Re: once more around the bushes
Hi HBD,
Curious, what do you see as the "take home message" from this article you referenced?
Small population size + genetic drift = no natural selection (or very little).

This message is a reply to:
 Message 212 by herebedragons, posted 05-27-2014 9:12 AM herebedragons has not replied

Replies to this message:
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faceman
Member (Idle past 3406 days)
Posts: 149
From: MN, USA
Joined: 04-25-2014


Message 225 of 253 (728608)
05-31-2014 2:04 AM
Reply to: Message 213 by Straggler
05-27-2014 10:14 AM


Re: Hox
So the Hox genes in our LUCA (1 bya) had all the information necessary to create the diverse body plans we see today?

This message is a reply to:
 Message 213 by Straggler, posted 05-27-2014 10:14 AM Straggler has replied

Replies to this message:
 Message 228 by Straggler, posted 05-31-2014 2:56 AM faceman has not replied

  
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