Hey Jackal32, It seems as if you are a one post wonder, but I'll make a quick comment.
How would your research differ from what current scientists are doing with protein structure/function? And how could a measly $5 million get you anywhere with such a huge project?
It appears that the structure determines the role.
Yes, structure plays a significant role in function. It is not the whole of the story, but it is significant.
This statement doesn't follow from your previous one. Software determines the role that the hardware plays. The same hardware can be used for different purposes depending on what software is loaded. The hardware/software concept is a poor analogy in this case.
I suspect that you heard this concept somewhere and got confused as to how to apply it.
HBD
Whoever calls me ignorant shares my own opinion. Sorrowfully and tacitly I recognize my ignorance, when I consider how much I lack of what my mind in its craving for knowledge is sighing for... I console myself with the consideration that this belongs to our common nature. - Francesco Petrarca
"Nothing is easier than to persuade people who want to be persuaded and already believe." - another Petrarca gem.
Ignorance is a most formidable opponent rivaled only by arrogance; but when the two join forces, one is all but invincible.