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Author Topic:   The End of Evolution By Means of Natural Selection
Percy
Member
Posts: 22480
From: New Hampshire
Joined: 12-23-2000
Member Rating: 4.8


Message 796 of 851 (575835)
08-21-2010 9:46 AM
Reply to: Message 795 by Bolder-dash
08-21-2010 8:33 AM


Re: Zhang and Saier
Bolder-dash writes:
I was having a scientific conversation with Wk, that you opted to get into.
Uh, yes, this is a public forum, and you were going way off topic. If you'd like to have a private conversation with WK then use the private messaging system.
What you said in Message 792 that I was responding to was this:
Bolder-dash in Message 792 writes:
I realize you are fighting to contain the idea to a natural one (because that is your desired conclusion)...
I responded that the issue is actually one of needing to evidence your assertions.
You have speculated that even adaptive mutations could arise through random mutations and natural selection. Fine-site any evidence if you have it, or don't preach about not caring if the evidence can be "seen, heard, tasted, smelled or touched,..". In this instance what you have is none of those. You only have your speculation. What is that worth?
You've misunderstood. There's no claim of direct evidence that the mechanisms driving directed mutations were themselves the result of mutation and natural selection. The claim is that the same mechanisms of mutation and natural selection that have been observed operating in the world today were also in operation throughout the history of life on this planet, and that they are sufficient to explain the appearance of mechanisms for directed mutations. There is no need to invoke unknown and unevidenced non-natural mechanisms. The claim is that processes and mechanisms that we actually know can happen and have happened were involved, and not ones that are made up.
About my religious beliefs, since you don't know what they are, and I didn't bring them up here...
Yes, you did bring up your religious beliefs, when you accused me of making natural explanations the "desired conclusion." Or are you going to claim that wasn't an argument for the supernatural?
The topic of the thread is the validity of natural selection as part of evolutionary theory. I suggest you talk about that instead of accusing people of being afraid to admit that their theory is in tatters or that they're driving toward inappropriate desired conclusions.
I don't know if I've mentioned this before, but your patten is to take a short vacation, then return and debate rationally for a while but followed by going off the deep end after a few days. Could we break the pattern this time?
--Percy

This message is a reply to:
 Message 795 by Bolder-dash, posted 08-21-2010 8:33 AM Bolder-dash has not replied

  
crashfrog
Member (Idle past 1489 days)
Posts: 19762
From: Silver Spring, MD
Joined: 03-20-2003


Message 797 of 851 (575877)
08-21-2010 3:00 PM
Reply to: Message 792 by Bolder-dash
08-21-2010 7:09 AM


Re: Zhang and Saier
As someone who studies biology, he has seen that there are plenty of things in nature and science that can't be so easily explained by simple random mutation and natural selection, as you believe.
As someone who has not ever studied biology, why do you believe that this is true? Faith?

This message is a reply to:
 Message 792 by Bolder-dash, posted 08-21-2010 7:09 AM Bolder-dash has not replied

  
0ut0f0rder
Junior Member (Idle past 4989 days)
Posts: 4
Joined: 08-20-2010


Message 798 of 851 (575962)
08-22-2010 2:05 AM


Evolution- Biology- Rate of Change
There are moments throughout time where evolution pushes forward and different species are capable of evolving at a faster rate than usual. However, this accelerated rate of change takes anywhere from 10,000 years to a million years to occur. With the acceleration of technology in the past 50 years it may become impossible for human evolution to keep up with the pace of technology. What do we do when evolution can't keep up with the rate of change in technology that humans are now forced to confront?
Could global warming and environmental catastrophes be an example of how our technology is improving faster than we can see the biological impact on our planet Earth?
I remember seeing a discussion like this on evolution and technology on a Facebook community page Update Your Browser | Facebook
Here’s a link to the actual video on evolution.
Update Your Browser | Facebook

  
Wounded King
Member
Posts: 4149
From: Cincinnati, Ohio, USA
Joined: 04-09-2003


Message 799 of 851 (576236)
08-23-2010 11:06 AM
Reply to: Message 783 by Taq
08-20-2010 5:39 PM


Re: Zhang and Saier
In order for this system to stay intact you would also need constant exposure to glycerol.
This is overstating things a bit, in order for it to stay extant in the bacterial population you wouldn't need constant exposure. I agree you would need exposure regularly enough for it to be maintained but I couldn't give you any reasonable estimate offhand of what that means in terms of such a trait in a bacterial population but I think your extended period of time would have to be quite substantial.
What I think would be interesting would be finding out at what sort of frequency this insertion occurs at normally when glycerol is in the environment and there is an active Crp gene. All of the experiments from Zhang and Saier are done in a Crp- genetic background where virtually all glycerol metabolism will have been abolished. Clearly this creates a massive selective pressure in favour of bacteria which are able to metabolise glycerol.
But if we consider what we are seeing to be a form of regulation for further increasing glycerol metabolism when glycerol is in the environment, rather than the rather outlandish idea of an emergency backup system in the unlikely event that the Crp gene is deleted, then we would expect to see a sporadic amount of insertions in a wild type genetic background allowing increased glycerol metabolism. Zhang and Saier showed in a further paper that the level of glycerol phosphorylation, an indicator of Glycerol kinase activity ( a proxy for the glycerol metabolising activity of the proteins regulated by glpFK), is higher in bacteria carrying the insertion in a Crp- background than in the Wild Type without the insertion (Zhang and Saier, 2009). I'd suggest that this would also mean that the insertion occuring in a Wild Type background would also have a higher level of glycerol metabolism.
TTFN,
WK

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 Message 783 by Taq, posted 08-20-2010 5:39 PM Taq has not replied

  
Taq
Member
Posts: 10045
Joined: 03-06-2009
Member Rating: 5.3


Message 800 of 851 (576266)
08-23-2010 2:14 PM
Reply to: Message 785 by Bolder-dash
08-20-2010 9:04 PM


Re: Zhang and Saier
So without RM and natural selection, you realize your theory is in tatters, but you don't have any to replace it, so what can you do?
The glycerol metabolism example is but a single example. We know from experimentation that the vast majority of mutations do come about through random mechanisms, and that those random mutations do pass through natural selection.
What you need to show is that every single mutation occurs through a similar mechanism.
If an organisms sprouts a brand new head in a day, well you can just say that is another mechanism for evolution.
Perhaps you can stick to real world observations instead of inventing fantasies to falsify the theory?

This message is a reply to:
 Message 785 by Bolder-dash, posted 08-20-2010 9:04 PM Bolder-dash has not replied

  
Wounded King
Member
Posts: 4149
From: Cincinnati, Ohio, USA
Joined: 04-09-2003


Message 801 of 851 (576681)
08-25-2010 5:25 AM
Reply to: Message 784 by Nij
08-20-2010 8:22 PM


Re: D'oh.
So, that paper effectively has beneficial mutations happening more often, simply because they're beneficial?
No, it has a specific type of mutation that is beneficial ocurring which is otherwise repressed.
If you're in a bad environment, then any mutation is more likely to be beneficial instead of um, not-beneficial, as compared to an okay or even good environment.
No, but if you are in a 'bad' environment then selective pressures aare going to be much higher and even a slight advantage can be greatly magnified in terms of reproductive success.
if every one of your alleles is perfectly suited to the environment, any change will be harmful ('living fossil' species for example, perfectly adpated to their nche, so they remain unchanged for millenia).
That is a very big 'if', the idea that evolution should give rise to perfectly adapted alleles is a specious one. It is also worth noting that while living fossils are morphologically conserved we have no idea how genetically conserved they are.
So, the closer you are to being suited to the environment, the less likely you are to receive a good mutation. The further you are from being suited, the more likely you are to receive a good mutation.
This is probably the most accurate characterisation. The more optimally adapted an organism is to its environment the less beneficial any given mutation is likely to be.
Which means bacteria in the bad place will of course end up with more beneficial mutations.
This very much depends on the particular challenges that make it a 'bad' environment. Some challenges may have multiple possible mutations that could ameliorate them while others may simply be too restrictive, or perhaps only have a very small number of possible beneficial mutations available from the current bacterial genome.
TTFN,
WK
Edited by Wounded King, : No reason given.

This message is a reply to:
 Message 784 by Nij, posted 08-20-2010 8:22 PM Nij has replied

Replies to this message:
 Message 802 by Nij, posted 08-25-2010 5:41 AM Wounded King has not replied
 Message 803 by barbara, posted 08-26-2010 9:28 AM Wounded King has replied

  
Nij
Member (Idle past 4911 days)
Posts: 239
From: New Zealand
Joined: 08-20-2010


Message 802 of 851 (576685)
08-25-2010 5:41 AM
Reply to: Message 801 by Wounded King
08-25-2010 5:25 AM


Re: D'oh.
So, the closer you are to being suited to the environment, the less likely you are to receive a good mutation. The further you are from being suited, the more likely you are to receive a good mutation.
This is probably the most accurate characterisation. The more optimally adapted an organism is to its environment the less beneficial any given mutation is likely to be.
Which is exactly what I was aiming for. Maybe I tried talking too much.
The rest of the problems probably derived from my cluelessnes of what the paper said.

This message is a reply to:
 Message 801 by Wounded King, posted 08-25-2010 5:25 AM Wounded King has not replied

  
barbara
Member (Idle past 4824 days)
Posts: 167
Joined: 07-19-2010


Message 803 of 851 (576884)
08-26-2010 9:28 AM
Reply to: Message 801 by Wounded King
08-25-2010 5:25 AM


Re: D'oh.
Science has not proven that any mutations over time will produce a new species or life form. The mutations that do not have a protein assigned to it are unknown as what affect it has now or what it will do in the future. The only mutations that we are aware of is the ones that cause diseases and that is still speculative. Science makes the assumption that mutations over a long period of time will produce new characteristics that it no longer appears what it looks like today.
Will science give the sea slug a new phyla group once chloroplasts becomes a permanent member of its DNA? This one is definitely a case of evolution since it is being transformed right now. It also didn't need require millions of years in its changeover to obtain this valuable new trait. Each generation as it consumes more and more chloroplasts, the DNA of chloroplasts is moving segments at a time into the sea slugs until eventually it will no longer require it to eat algae anymore.

This message is a reply to:
 Message 801 by Wounded King, posted 08-25-2010 5:25 AM Wounded King has replied

Replies to this message:
 Message 804 by Wounded King, posted 08-26-2010 10:00 AM barbara has not replied
 Message 805 by Coyote, posted 08-26-2010 11:52 AM barbara has not replied
 Message 806 by Taq, posted 08-26-2010 1:44 PM barbara has not replied

  
Wounded King
Member
Posts: 4149
From: Cincinnati, Ohio, USA
Joined: 04-09-2003


Message 804 of 851 (576892)
08-26-2010 10:00 AM
Reply to: Message 803 by barbara
08-26-2010 9:28 AM


Mixed up on sea slugs.
The only mutations that we are aware of is the ones that cause diseases and that is still speculative.
This simply isn't true, there are many documented beneficial mutations. As to disease causing mutations being speculative, I can't see how anyone with even the faintest familiarity with actual research into such things could make such a claim. There are a wide range of genetic diseases for which the causative mutations are well known and the mechanisms by which they cause disease well understood.
Will science give the sea slug a new phyla group once chloroplasts becomes a permanent member of its DNA?
I doubt it though these sea slugs are a fascinating example of both endosymbiosis and horizontal gene transfer.
This one is definitely a case of evolution since it is being transformed right now.
I'm not sure what you mean by this, as far as I know these sea slugs haven't just suddenly switched to this strategy of harvesting plastids from algae. This seems to be hinged on you assumption that there is an ongoing process which will eventually transfer all the neccessary nuclear genes for plastid function to the sea slug, but there isn't really any basis for such an assumption.
Each generation as it consumes more and more chloroplasts, the DNA of chloroplasts is moving segments at a time into the sea slugs until eventually it will no longer require it to eat algae anymore.
Any evidence for this? Incidentally it is the algal DNA not that of the chloroplasts that has been transferred since the chloroplast DNA does not in fact provide all the necessary genetic infromation for producing functioning chloroplasts.
I know there is evidence for the transfer of algal genes into the sea slug genome but I don't know of anything to support your contention that this is an incremental process 'each generation'.
I agree that were the correct genes all to be transferred then it is possible that a sea slug could eventually evolve which was independent of the algae as a source of chlorplasts, but I certainly don't see that outcome as inevitable.
TTFN,
WK

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 Message 803 by barbara, posted 08-26-2010 9:28 AM barbara has not replied

  
Coyote
Member (Idle past 2128 days)
Posts: 6117
Joined: 01-12-2008


Message 805 of 851 (576906)
08-26-2010 11:52 AM
Reply to: Message 803 by barbara
08-26-2010 9:28 AM


New species
Science has not proven that any mutations over time will produce a new species...
The evidence indicates that new species are produced, and that mutations and natural selection play a large role in this process.
This is what biologists and geneticists have concluded. It appears that the primary opposition to this comes from believers in certain fundamentalist religions, and their beliefs are not supported by scientific evidence.
Unless you have some evidence I am not aware of?

Religious belief does not constitute scientific evidence, nor does it convey scientific knowledge.

This message is a reply to:
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Taq
Member
Posts: 10045
Joined: 03-06-2009
Member Rating: 5.3


Message 806 of 851 (576926)
08-26-2010 1:44 PM
Reply to: Message 803 by barbara
08-26-2010 9:28 AM


Re: D'oh.
Science has not proven that any mutations over time will produce a new species or life form.
The proof is in our genomes and the genomes of other species. It is quite simple, really.
Why are humans and chimps different? It is because our DNA is different.
Mutations cause DNA to be different.
It is an inescapable conclusion that changing DNA through mutations will result in different species.
only mutations that we are aware of is the ones that cause diseases and that is still speculative.
That is completely false. You might want to check out the Human Haplotype (or HapMap) Project:
http://www.genome.gov/10001688
We know of tons of neutral mutations.
Will science give the sea slug a new phyla group once chloroplasts becomes a permanent member of its DNA?
Most biologists use cladistics nowadays so the phyla designation really doesn't have that much pull. No matter what happens to the sea slug it will always be a member of its clade.

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 Message 803 by barbara, posted 08-26-2010 9:28 AM barbara has not replied

  
Wounded King
Member
Posts: 4149
From: Cincinnati, Ohio, USA
Joined: 04-09-2003


Message 807 of 851 (577092)
08-27-2010 6:57 AM
Reply to: Message 785 by Bolder-dash
08-20-2010 9:04 PM


Re: Zhang and Saier
Let's face it WK, you are pretty skeptical of the whole random mutation natural selection cock and bull story, aren't you?
No ...
You have studied biology, and you realize that there is no way it can account for all the life on earth.
... and yes. As I have said several times evolutionary biology does not pretend that random mutation and natural selection are sufficient explanation for the entire observed diversity of life on Earth.
And that is why you are trying to downplay its role in your theory, and you are always mentioning "other mechanisms".
I'm not trying to downplay anything just to portray a more realistic version of modern evolutionary biology than the straw man you put forward. The other mechanisms are not some vague incohate concept they are things like horizontal gene transfer, endosymbiosis, heritable epigenetic variation and probably others not as well understood.
The problem is, those mechanisms you described,
...
are not a mechanism at all, but in fact a process, a system. That is why you even used the word system.
Well that wasn't really what I was talking about in terms of other mechanisms, but I would certainly not quibble that the transposon insertion is a mechanism which forms part of the glycerol metabolism regulation system.
So without RM and natural selection, you realize your theory is in tatters, but you don't have any to replace it, so what can you do?
This fits so many wrong assertions and assumptions into one sentence it is hard to know where to begin. We haven't somehow lost RM and natural selection as explanations. Their not being able to explain the entire diversity of life on Earth doesn't mean they can't contribute substantially towards explaining that diversity. We don't lose anything by gaining understanding of other mechanisms which generate heritable variation.
You can say there are many other mechanisms involved in your theory, still try to call it Darwinian evolution, and each time a new discovery is made involving another process that organisms go through, just throw on another label of "other mechanisms." , when in fact you are talking about a system, not a mechanism.
Well now you seem to be reaching to semantic cheeseparing in the absence of any substantial argument. Despite continual Idisat/Creationist bleatings evolutionary biology is not an atheist religion, if traditionally held 'dogma' is challenged by solid evidence it will be overturned, it happened with the central dogma of molecular biology when reverse transcription was discovered and arguably with Prions.
If an organisms sprouts a brand new head in a day, well you can just say that is another mechanism for evolution.
Unless its offspring subsequently had 2 heads then it wouldn't be anything to do with evolution.
The theory becomes so flexible and so accommodating as to become meaningless, and I honestly believe in the back of your mind, with what you have studied, you are starting to realize this.
I really don't see how this is the case. The point of evolutionary theory is not to dictate to reality how it must behave but to allow us to explain and model the reality of biological evolution as accurately as we can.
TTFN,
WK
Edited by Wounded King, : corrected typo

This message is a reply to:
 Message 785 by Bolder-dash, posted 08-20-2010 9:04 PM Bolder-dash has replied

Replies to this message:
 Message 808 by Bolder-dash, posted 08-27-2010 7:26 AM Wounded King has not replied
 Message 809 by Bolder-dash, posted 08-27-2010 7:32 AM Wounded King has replied

  
Bolder-dash
Member (Idle past 3652 days)
Posts: 983
From: China
Joined: 11-14-2009


Message 808 of 851 (577094)
08-27-2010 7:26 AM
Reply to: Message 807 by Wounded King
08-27-2010 6:57 AM


Re: Zhang and Saier
Where are you claiming these processes, like endosymbiosis, and epigenetic inheritances arose from? Were they random mutations that were selected for through natural selection?

This message is a reply to:
 Message 807 by Wounded King, posted 08-27-2010 6:57 AM Wounded King has not replied

  
Bolder-dash
Member (Idle past 3652 days)
Posts: 983
From: China
Joined: 11-14-2009


Message 809 of 851 (577095)
08-27-2010 7:32 AM
Reply to: Message 807 by Wounded King
08-27-2010 6:57 AM


Re: Zhang and Saier
How about transposon insertion, where did that "mechanism" come from? Random mutations?

This message is a reply to:
 Message 807 by Wounded King, posted 08-27-2010 6:57 AM Wounded King has replied

Replies to this message:
 Message 810 by Percy, posted 08-27-2010 8:12 AM Bolder-dash has not replied
 Message 811 by Wounded King, posted 08-27-2010 8:33 AM Bolder-dash has replied

  
Percy
Member
Posts: 22480
From: New Hampshire
Joined: 12-23-2000
Member Rating: 4.8


Message 810 of 851 (577105)
08-27-2010 8:12 AM
Reply to: Message 809 by Bolder-dash
08-27-2010 7:32 AM


Re: Zhang and Saier
Hi Bolder-dash,
Have you thought ahead to how your line of questioning might somehow provide support for your position? There's so much science doesn't know that you should have little problem coming across things we don't know, but everything we didn't know and later figured out turned out to have natural causes. Nothing has ever been traced to an IDer or the supernatural. For this reason things we don't know cannot be evidence of an IDer or the supernatural.
When we study transposons there is no evidence of anything going on except matter and energy following the physical laws of the universe. Even if we had no idea how the transposon process originated it wouldn't help your cause.
If you're looking for things we don't know then I don't understand why you're bothering with questions buried in the details of microbiological processes. Why don't you just go straight to the big items for which science has developed no consensus. While there are plenty of ideas, we don't know what caused the Big Bang, and we don't know how life originated. If our lack of knowledge in these areas doesn't help your cause, how in the word is any lack of knowledge about details like transposons or epigenetics or endosymbiosis going to help you?
You need to find a strategy that might actually work. Could I suggest searching for evidence for your favorite theory, ID?
--Percy

This message is a reply to:
 Message 809 by Bolder-dash, posted 08-27-2010 7:32 AM Bolder-dash has not replied

  
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