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Author Topic:   Non-mendelian genetics/ non-darwinian evolution
Taqless
Member (Idle past 5935 days)
Posts: 285
From: AZ
Joined: 12-18-2003


Message 46 of 56 (153100)
10-26-2004 4:57 PM
Reply to: Message 41 by Mammuthus
10-26-2004 8:49 AM


Re: Defining "non-Mendelian"?
I would say parental. I think it is much more likely that two members of the same species share the exact same DNA sequences as opposed to the exact same imprinting pattern. I would expect that an F1 offspring would share the imprinting pattern of its parents but perhaps with more variability than seen at the genetic level i.e. methylation differences accrue more rapidly than DNA sequence differences.....
I agree with this.
Differential methlyation of a non-expressed, non-coding piece of junk DNA is probably tolerable for an organism....
My thoughts would be that
1) Species imprinting could contribute to differential expression of coding/non-coding between species that share significant nucleotide homology and explain the tolerated accrual of mutations one sees in the non-coding sections of human DNA by setting the stage for this differential methylation/acetylation you were suggesting as a species block...maybe. Where the focus is conservation of specific species.
...But screw up methylation or acetlyation of the Xist locus and it causes major problems.
- Then the parental imprinting, much more plasticity involved, where the imprinting of heritability affected by environment (oocyte, in utero, nuclear, take your pick) but again not in a mendelian fashion, but in addition to mendelian genetics. I think that is what you were already saying though (right?). The focus would be conservation of organism function (whatever level that might be).
So, a tri-level approach (species imprinting, parental imprinting, and mendelian genetics) to getting to the point that you and I are discussing this (of course that simple ). Maybe this was what you were suggesting as well? I hope I managed to make sense since my communication skills seem to wane at times.

This message is a reply to:
 Message 41 by Mammuthus, posted 10-26-2004 8:49 AM Mammuthus has not replied

  
Taqless
Member (Idle past 5935 days)
Posts: 285
From: AZ
Joined: 12-18-2003


Message 47 of 56 (153114)
10-26-2004 6:30 PM
Reply to: Message 44 by pink sasquatch
10-26-2004 2:43 PM


You know what, lol, I'm calling a truce. I think somewhere the gist if what I had meant to say in the first post has gotten lost. We are not getting any further and we have digressed to picking at small things, and I do mean 'we', so have a great week .
-Cheers

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Wounded King
Member
Posts: 4149
From: Cincinnati, Ohio, USA
Joined: 04-09-2003


Message 48 of 56 (158381)
11-11-2004 12:26 PM


New paper on epigenetic inheritance in flies
I just had my attention drawn to a new paper in 'Genes & Development' on an apparent induction of stable epigenetic inheritance in flies.
The Promoter Targeting Sequence mediates epigenetically heritable transcription memory.
Lin Q, Chen Q, Lin L, Zhou J.
Genes Dev. 2004 Nov 1;18(21):2639-51.
Large gene complexes frequently use "specialized" DNA elements to ensure proper regulation of gene activities. The Promoter Targeting Sequence (PTS) from the Abdominal-B locus of the Drosophila Bithorax complex overcomes an insulator, and facilitates, yet restricts, distant enhancers to a single promoter. We found that this promoter-targeting activity is independent of an enhancer's tissue or temporal specificity, and can be remembered in all somatic cells in the absence of promoter activation. It requires an insulator for its establishment, but can be maintained by the PTS in the absence of an insulator. More importantly, the promoter-targeting activity can be remembered after the transgene is translocated to new chromosomal locations. These results suggest that promoter targeting is established independent of enhancer activity, and is maintained epigenetically throughout development and subsequent generations.
It isn't totally clear how distinct this mechanism is from other previously noted epigenetic modifications localised to chromatin restructuring or methylation but it has been induced in a novel way.
TTFN,
WK

  
Wounded King
Member
Posts: 4149
From: Cincinnati, Ohio, USA
Joined: 04-09-2003


Message 49 of 56 (193968)
03-24-2005 7:19 AM


I'm a bad lazy person and I never got around to properly writing up my thoughts on this topic. Nevertheless I thought I might bump this thread since a new and interesting 'non-mendelian' paper has come up. The paper is being discussed in the 'Mendel wasn't entirely right' thread, whose originator seems to be under the impression that Mendelian genetics is both the be all and end all of genetics and some sort of keystone of all evolution, so I thought a little reminder of the other factors known to mediate inherited characteristics would be worthwhile.
TTFN,
WK

  
Raelian1
Inactive Member


Message 50 of 56 (198548)
04-12-2005 10:40 AM


All life, including us, were created by scientists from another planet. As you can see, life can not evolve random, someone has to interact to create these new lifeforms. To read more, go to rael.org and check out a free e-book.

Replies to this message:
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AdminNosy
Administrator
Posts: 4754
From: Vancouver, BC, Canada
Joined: 11-11-2003


Message 51 of 56 (198601)
04-12-2005 11:53 AM
Reply to: Message 50 by Raelian1
04-12-2005 10:40 AM


Gettting to be spam like?
You are doing a bit too much pushing of your favourite site. This is a discussion forum.
I suggest you restrict yourself to one or two discussions. If you wish to make claims of what you consider fact in them you will have to support your claims. This support will have to be posted here with both evidence and reasoning.
If you continue to post as you have been I will have to suspend your posting priveldges for a period of time.

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Wounded King
Member
Posts: 4149
From: Cincinnati, Ohio, USA
Joined: 04-09-2003


Message 52 of 56 (214918)
06-07-2005 5:42 AM


Stable germ line epigentic mutation.
More epigenetic inheritance research, this time from Science.
Epigenetic transgenerational actions of endocrine disruptors and male fertility.
Anway MD, Cupp AS, Uzumcu M, Skinner MK.Science.
2005 Jun 3;308(5727):1466-9.
Transgenerational effects of environmental toxins require either a chromosomal or epigenetic alteration in the germ line. Transient exposure of a gestating female rat during the period of gonadal sex determination to the endocrine disruptors vinclozolin (an antiandrogenic compound) or methoxychlor (an estrogenic compound) induced an adult phenotype in the F1 generation of decreased spermatogenic capacity (cell number and viability) and increased incidence of male infertility. These effects were transferred through the male germ line to nearly all males of all subsequent generations examined (that is, F1 to F4). The effects on reproduction correlate with altered DNA methylation patterns in the germ line. The ability of an environmental factor (for example, endocrine disruptor) to reprogram the germ line and to promote a transgenerational disease state has significant implications for evolutionary biology and disease etiology.
So this methylation based male infertility has been heritable over 4 generations.
TTFN,
WK

  
Wounded King
Member
Posts: 4149
From: Cincinnati, Ohio, USA
Joined: 04-09-2003


Message 53 of 56 (315126)
05-25-2006 12:17 PM


Another non-mendelian example probably related to epigenetic factors. In mice again and this time associated with tail colour (Rassoulzadegan, et al., 2006).
RNA-mediated non-mendelian inheritance of an epigenetic change in the mouse
Paramutation is a heritable epigenetic modification induced in plants by cross-talk between allelic loci. Here we report a similar modification of the mouse Kit gene in the progeny of heterozygotes with the null mutant Kittm1Alf (a lacZ insertion). In spite of a homozygous wild-type genotype, their offspring maintain, to a variable extent, the white spots characteristic of Kit mutant animals. Efficiently inherited from either male or female parents, the modified phenotype results from a decrease in Kit messenger RNA levels with the accumulation of non-polyadenylated RNA molecules of abnormal sizes. Sustained transcriptional activity at the postmeiotic stages”at which time the gene is normally silent”leads to the accumulation of RNA in spermatozoa. Microinjection into fertilized eggs either of total RNA from Kittm1Alf/+ heterozygotes or of Kit-specific microRNAs induced a heritable white tail phenotype. Our results identify an unexpected mode of epigenetic inheritance associated with the zygotic transfer of RNA molecules.
TTFN,
WK

Replies to this message:
 Message 54 by EZscience, posted 05-25-2006 1:57 PM Wounded King has replied

  
EZscience
Member (Idle past 5175 days)
Posts: 961
From: A wheatfield in Kansas
Joined: 04-14-2005


Message 54 of 56 (315136)
05-25-2006 1:57 PM
Reply to: Message 53 by Wounded King
05-25-2006 12:17 PM


Inheritance of symbionts
Most aphid species carry obligate symbionts in the form of various strains of the bacterium Buchnera aphidicola. The bacteria cannot survive outside the aphid and the aphid relies on them to synthesize various amino acids (usually trypotophan) that it cannot produce for itself. The bacteria are housed in a special cellular organelle, a bacteriocyte, and are inherited vertically - every developing aphid embryo receives symbionts through special processes growing from neighboring maternal bacteriocytes.
Things got more interesting with the discovery of a series of 'secondary' aphid sympbiotes belonging to various other bacterial genera. These are not completely essential for aphid survival, but some provide the aphid with interesting and unique phenotypic abilities (new host range, change in thermal tolerance, etc.). Cytological studies have revealed these bacteria 'piggy-backing' on the bacteriocytes of the primary symbionts to ensure their inheritance, although they are not actually housed within them (yet?) and their inheritance is not as consistent (usually less than 100%).
So my question is, would you consider the vertical inheritance of such symbionts to constitute a valid form of epigenetic inheritance, at least relative to the genome of the aphid ?
I guess we first have to decide whether the symbionts still deserve status as separate organisms, or whether the aphid+symbionte can be considered 'all one organism' at this point, in which case I guess the answer would be 'yes'.

This message is a reply to:
 Message 53 by Wounded King, posted 05-25-2006 12:17 PM Wounded King has replied

Replies to this message:
 Message 55 by Wounded King, posted 05-26-2006 7:00 AM EZscience has replied

  
Wounded King
Member
Posts: 4149
From: Cincinnati, Ohio, USA
Joined: 04-09-2003


Message 55 of 56 (315248)
05-26-2006 7:00 AM
Reply to: Message 54 by EZscience
05-25-2006 1:57 PM


Re: Inheritance of symbionts
I'd be inclined to count this as a form of cytoplasmic inheritance if the bacteria aren't actually enclosed in the bacteriocyte.
Actually looking at some of the literature it seems that rather than an organelle, unless you are using this in an unusual way, the bacteriocytes are actually specialised cells (Braendle, et al., 2003).
It sounds quite similar to the maternal transmission of acquired immunity to me. I'd definitely tend to consider this a valid example of epigentic inheritance, akin to mitochondrial inheritance but on an organismal rather than cellular level.
TTFN,
WK
Edited by Wounded King, : for comprehensibility

This message is a reply to:
 Message 54 by EZscience, posted 05-25-2006 1:57 PM EZscience has replied

Replies to this message:
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EZscience
Member (Idle past 5175 days)
Posts: 961
From: A wheatfield in Kansas
Joined: 04-14-2005


Message 56 of 56 (315257)
05-26-2006 8:42 AM
Reply to: Message 55 by Wounded King
05-26-2006 7:00 AM


Re: Inheritance of symbionts
WK writes:
the bacteriocytes are actually specialised cells
Yes, my incorrect terminology. The Buchnera are fully enclosed by special cells.
I think it's fascinating that these secondary endosymbiontes are now jockeying for position (competing?) with the more ancient Buchnera for a position within the aphids. Organisms can be viewed as composite micro-ecosystems.
Incidentally, the genetic phyllogeny of the Buchnera complex has a wonderful congruency with the genetic phylogeny of the Aphididae and various novel acquisition events can be inferred in different aphid lineages.

This message is a reply to:
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